Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01003 ATGGATATCGAGGAGGACATTCGTGCTTTAGAACTTGATTCACCAGATGTTAACGGGGTTCCCAATCCAGATGCAAGGATGGAAGAAATTGGGAAATCCGATAATGTAGAAGGAGATTTGAAGACAGAGGACCATCCCCAACCAGCCCAAGCTATCCACGTTGAAGAACAATGTGATGTCGAGGAGAAAATACCTGCAAAGGAGAAGGAAATCTCTTTGACTGAAAACGAAGGTGAAGGGGATTTGGAGTTGGATCGTAAAAGACACTTGAATGTTGTGTTCATTGGTCATGTCGATGCTGGTAAGTCTACAATTGGAGGCCAGATACTTTTCCTTAGCAATCAGGTTGATGAGCGTACAATCCAAAAGTATGAAAAAGAAGCAAAGGATAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGGAAAACTGTTGAAGTGGGAAGAGCACATTTTGAAACTGATACTACAAGGTTTACAATTTTAGACGCTCCGGGTCACAAAAGTTATGTCCCAAATATGATCAGTGGGGCATCTCAGGCTGATATAGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCAAAAACGTTGGGTGTTGCTAAGCTTCTTGTTGTAGTGAATAAGATGGATGAACCCACAGTAAAATGGTCGAAAGAAAGGTATGACGAGATAGAGTCTAAGATGGCACCCTTCTTGAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAGTTTTTACCTATATCTGGTCTTCATGGTGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGTCCCTGGTGGAATGGTCCGTGCTTGTTTGAAATCCTTGATACAATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCTATCATTGACAAATTCAAGGACATGGGAACAACTGTTATGGGTAAAGTCGAATCTGGCACTGTGCGCGAGGGTGATTCCTTATTGGTAATGCCAAATAAGATTCAGGTGAAAGTTGCTGCTGTTTTGTGTGATGAAAGCAAAGTTAAGAGCGCAGGACCTGGTGAAAATCTTCGTGTTAGAATATCTGGAATTGAAGAAGAAGAAATAATGTCTGGGTTTGTACTATCAAGCGTTGCAAAACCTATACCCGCTGTTTCTGAGTTTGTTGCGCAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCCGTACTTCACATTCATGCTGTTGTTGAAGAATGCGAGATCATAGAGCTGCTTCAGCAGATTGATCCGAAGACTAGGAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAATTATTTTGTGCCGCATCCAGGTCAATAACTTGATCTGCATTGAGAAGTTTTCTGACGTTCCTCAGCTTGGAAGATTTACACTTCGTACCGAAGGGAAGACAGTCGCTGTAGGAAAGGTCACTGATATTCCGGCTGCAAGCAATTAA 1557 41.55 MDIEEDIRALELDSPDVNGVPNPDARMEEIGKSDNVEGDLKTEDHPQPAQAIHVEEQCDVEEKIPAKEKEISLTENEGEGDLELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDEPTVKWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWNGPCLFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLLVMPNKIQVKVAAVLCDESKVKSAGPGENLRVRISGIEEEEIMSGFVLSSVAKPIPAVSEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAIILCRIQVNNLICIEKFSDVPQLGRFTLRTEGKTVAVGKVTDIPAASN 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7739614 7751145 + CmaCh13G010030.1 Cma13g01003 306830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01003 518 CDD EF1_alpha 91 312 - -
Cma13g01003 518 PANTHER BNAA06G12300D PROTEIN 77 509 - -
Cma13g01003 518 CDD eRF3_II 318 399 - -
Cma13g01003 518 PANTHER TRANSLATION FACTOR 77 509 - -
Cma13g01003 518 MobiDBLite consensus disorder prediction 1 47 - -
Cma13g01003 518 Coils Coil 114 134 - -
Cma13g01003 518 MobiDBLite consensus disorder prediction 27 47 - -
Cma13g01003 518 Pfam Elongation factor Tu GTP binding domain 87 300 IPR000795 GO:0003924|GO:0005525
Cma13g01003 518 CDD eRF3_C_III 405 513 - -
Cma13g01003 518 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 87 316 IPR000795 GO:0003924|GO:0005525
Cma13g01003 518 Pfam Elongation factor Tu C-terminal domain 404 513 IPR004160 -
Cma13g01003 518 SUPERFAMILY Translation proteins 311 403 IPR009000 -
Cma13g01003 518 Pfam Elongation factor Tu domain 2 331 397 IPR004161 GO:0005525
Cma13g01003 518 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 143 158 IPR031157 -
Cma13g01003 518 Gene3D Translation factors 316 401 - -
Cma13g01003 518 Gene3D Translation factors 406 514 - -
Cma13g01003 518 PRINTS GTP-binding elongation factor signature 91 104 IPR000795 GO:0003924|GO:0005525
Cma13g01003 518 PRINTS GTP-binding elongation factor signature 170 180 IPR000795 GO:0003924|GO:0005525
Cma13g01003 518 PRINTS GTP-binding elongation factor signature 186 197 IPR000795 GO:0003924|GO:0005525
Cma13g01003 518 PRINTS GTP-binding elongation factor signature 230 239 IPR000795 GO:0003924|GO:0005525
Cma13g01003 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 322 IPR027417 -
Cma13g01003 518 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 408 513 IPR009001 -
Cma13g01003 518 Gene3D - 71 310 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01003 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - csv:101217809 902.508
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01003 Cma18g00058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01003 Cma-Chr13:7739614 Cma15g00437 Cma-Chr15:1959053 3.84E-93 dispersed
Cma13g01003 Cma-Chr13:7739614 Cma18g00058 Cma-Chr18:245718 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01003 Cma_Chr13 FPKM 44.333561 48.485485 81.278702 81.012009 49.577217 48.33868 50.62656 125.90097 123.972267 134.655945