Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01005 ATGGGGAGCCCTGCATTAAGTGGCCGGAATAACGGGCAGCGATTAGGCATTACTGATCCTATTTCGTTGAGTGGGCCGACGGAGTATGATGTGATAAAGACTCGCGAACTCGAAAAGTATCTGCAAGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGGAGACTAGACCAGATTGTGAAGATTTGGGTTAAAACAATTAGTCGTGCGAAGGGGTTGAATGAGCAACTGGTGCAAGAAGCCAATGCTAAGATTTTCACGTTCGGTTCATATCGTTTAGGGGTGCATGGCCCTGGAGCAGATATTGATACGCTGTGTGTGGGACCTAGACATGCAACACGTGAAGAGGACTTTTTCGGTGAGCTACATAAAATACTGTCAGAGATGCCAGAAGTATCTGAGTTGCACCCTGTGCCTGATGCTCATGTCCCTGTGATGAAATTTAAGTTTGCCGGGATTTCTATTGATCTTCTCTATGCAAAATTGTCACTTTGGGTTATTCCTGAAGACTTGGATATATCTCAGGACTCGATACTACAGAATGCAGATGAACAGACAGTTCGTAGTTTAAATGGTTGTCGAGTTACTGATCGAGTTCTGCGATTAGTTCCAAATATTCAGAGTTTTCGAACAACATTGAGATGCATGAGGTTTTGGGCAAAACGCCGAGGCGTTTATTCCAATGTTTCTGGGTTTCTTGGCGGTATAAACTGGGCGTTGCTTGTTGCTCGCATATGCCAACTATATCCCAATGCATTGCCAAATATGCTCGTGTCTCGGTTTTTCAGGGTCTTCACCCGGTGGCGCTGGCCAAATCCAGTCATGCTCTGTGCTAATGAAGAAGGATCTCTTGGACTTCCAGTTTGGGATCCAAGGAGAAATCCGAAGGATAGATTCCATTTAATGCCTATTATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTTTCATCAAGCACTCTGCGTATTATGACTGAAGAATTTCAGAGGGGACATGATATTTGTGAGGTTATGGAAGAAAATAAGGCCGATTGGGATACACTTTTCGAGCCCTACCCCTTCTTCGAGGCGTACAAAAACTATTTACAAACTGACATTACTGCAGAAAATGATGATGATCTAAGAAACTGGAAGGGTTGGGTTGAATCTCGTCTTCGCCAACTGACATTGAAGATTGAGAGACATACGTATAACATGCTTCAGTGCCATCCACATCCAGGAGATTTTTCAGACAAATCCAGACCTTTCCACCATTGTTATTTCATGGGTTTGCAGCGAAAACAAGGAGTTCCTGCAAGTGAGGGTGAACAGTTCGATATGAGGTTGACAGTCGATGAATTTAAACGTTCTGTCAACATGTATACAATGCGAAAGCGTGGGATGGAGATTTATGTAACACATGTGAAAAGGAGGAATATACCAAATTTCGTTTTTCCGGGTGGAGTTCGACCTTCACGTGCATCAAAAATGACTTGGGATAGTAGGCGTAGTTTGGAACTAAAAGCTTCTGATAGCACTCAAGTAGACAGGCCTTTTGAAGCTACAGAAAGTTTAGATGGAGTAGAAGATAGAAGGAAAAGAAGGCGTATTGATTATAATGCAAATACTACCTTGAGAAATGGAGAGTGCTTGGCTGCTGCTCATTCCCAGCCTGTGGAAGTTCACGAAGTCAGCCAAATCAGCACCACTAGCTCATGTTCCATAAAGGATGTGAATTCTATTCCCACTAGTGCAAATAACATAGAAAATCTGGCAGATGTGTCCTCTCAGAATAATGGAGACCAAGCTGCGGCAGCTGATACACCAAGCTGTAAAGAAGCAGAGAAGCTGGCAATTCAAAAGATTCTGTCTGGCTCATACGACTCTCACAAAGAGTTTCCTTGTGAGCCTGAAGAGCTCGATGATATTGATTATACAAAACAAGCTATAGATTTTGGGGCCACTCGGCAAGGTATCCCCATGACGTCTTCGGTTGCAAAAACATCTTCCGTAGTAGTTCCTATGACATCTTGCAATGAAGCACGGCTGACCTCAAGATCATATTCCAATGGGGGCTTAGAGGAGCTTGAGCCTGCTGAAGTAGTGGCGCTATCGTCAACTGGGACCACTCGTGCACCCGTGGCCGAGCGAAAGCCAATCATCAGGTTGAGCTTCACTTCCTTGGGCAAGGCTGGTAAAAGCTCGTGA 2214 44.26 MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKILSEMPEVSELHPVPDAHVPVMKFKFAGISIDLLYAKLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDRVLRLVPNIQSFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYPNALPNMLVSRFFRVFTRWRWPNPVMLCANEEGSLGLPVWDPRRNPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGHDICEVMEENKADWDTLFEPYPFFEAYKNYLQTDITAENDDDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSRPFHHCYFMGLQRKQGVPASEGEQFDMRLTVDEFKRSVNMYTMRKRGMEIYVTHVKRRNIPNFVFPGGVRPSRASKMTWDSRRSLELKASDSTQVDRPFEATESLDGVEDRRKRRRIDYNANTTLRNGECLAAAHSQPVEVHEVSQISTTSSCSIKDVNSIPTSANNIENLADVSSQNNGDQAAAADTPSCKEAEKLAIQKILSGSYDSHKEFPCEPEELDDIDYTKQAIDFGATRQGIPMTSSVAKTSSVVVPMTSCNEARLTSRSYSNGGLEELEPAEVVALSSTGTTRAPVAERKPIIRLSFTSLGKAGKSS 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7757694 7763814 + CmaCh13G010050.1 Cma13g01005 306832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01005 737 MobiDBLite consensus disorder prediction 1 20 - -
Cma13g01005 737 CDD NT_PAP_TUTase 56 210 - -
Cma13g01005 737 Pfam Poly(A) polymerase central domain 16 360 IPR007012 GO:0004652|GO:0043631
Cma13g01005 737 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 361 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cma13g01005 737 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 666 - -
Cma13g01005 737 SUPERFAMILY PAP/OAS1 substrate-binding domain 211 360 - -
Cma13g01005 737 Pfam Poly(A) polymerase predicted RNA binding domain 423 494 IPR007010 GO:0003723|GO:0043631
Cma13g01005 737 Pfam Poly(A) polymerase predicted RNA binding domain 363 422 IPR007010 GO:0003723|GO:0043631
Cma13g01005 737 Pfam Nucleotidyltransferase domain 81 165 IPR002934 GO:0016779
Cma13g01005 737 Gene3D - 16 358 - -
Cma13g01005 737 Gene3D Poly(A) polymerase predicted RNA binding domain 362 477 - -
Cma13g01005 737 PANTHER POLY A POLYMERASE 1 666 - -
Cma13g01005 737 MobiDBLite consensus disorder prediction 1 21 - -
Cma13g01005 737 Gene3D Beta Polymerase, domain 2 48 204 IPR043519 -
Cma13g01005 737 SUPERFAMILY Nucleotidyltransferase 16 209 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01005 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - csv:101217340 1314.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01005 Cma-Chr13:7757694 Cma17g00760 Cma-Chr17:6130244 0 dispersed
Cma13g01005 Cma-Chr13:7757694 Cma18g00055 Cma-Chr18:229486 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g270 Blo04g00834 . . . . . . . Cmo13g01043 . . . . . . Cpe20g00138 . . . . . . . . . . . . . . . . . . . Lsi02g00215 Csa01g00698 Chy12g01415 Cme12g01849 . . . . . Bpe15g00533 Bma03g00902 . . . . Cma13g01005 . Car13g00840 Car18g00050 Cpe09g01126 . Bhi08g01267 Tan05g2221 . Lac10g0269 Hepe07g2369 . . Cla04g01067 Cam04g1110 Cec01g1624 Cco01g1671 Clacu04g1136 Cmu04g1119 Cre01g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01005 Cma_Chr13 FPKM 14.666411 16.410664 15.013786 16.250345 11.73645 10.606147 10.846534 36.25745 34.424515 38.236958