Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01007 ATGCAGCAGCACCACCACCACCTCAGGAAAGGAGGAGAGAAAAAGCGACTCAAATCGCTTCATAATCACTCATTTTCTTCCCCTTCTTCTTCTTCTTCCTCCTCTGCATTCAAATCTGGGAATGGAACAAAGAGATTCATTAAACTAAACTTCTTTAACGTTCATGCTTTTCTCTCTTTCAACTCAATTCATTCCCTTTCACTTTCTTTTCCTTGTTTAAGAATCATGCCTGTTGCTCCACAGACTTCTACAATTGGTGAACACATCAATTTGAGAAGACCCAGAAGCCATTTCAGCCAACCCATTTCAGAATCAGATCCAAACCCATCAATCCCTTCGATTATTCAATCCACTCGCTGCAAATCCACCATTTCTTCTCTCCTTCTCTCTACCTTTTCCAATAATTCAACCACCGGCGCCAATGAATGCTTACCCTCTTCCATTGCCACGAACAGGAAGAAGAACAACTTTTCTTCTGCAACGTTCAGGGGACTCGGTTGCACCAACGCTGCTTCTCAGCAGGTATCCGTCCCCGCTGTAATTCGAACTTCAGCGGATTGGGAAAAGAAGAAAACGAGGAAAAAAAAGCAGAAGAACTCCAAGAACAAAACCCATCAAGGAATTGTTGATGCCTCTCATTTTCATCCTAATTCGAGTATCAATTCTGCTAGCTGCTTAGACGCTCAAGATGTTTGGTGTGCCCCTGGAATTGAATTCGCTGCAGATGCGGCTGCTTCTGTGGATTGCGTTGTTGCTAGACGGCATGCTTCTGGAAGGGGAAAAATCGATTTGGAGAAGATTAATCAGAGGGAGCGTTCTTCTTTAGGAGGAAGACGAACTGTGAATCCCGAGACCCTTTTATATTTGGATTCTGATTCTGATCTTCCAACTGCTCGATCATTTGAACTGTCTCGGAGTCGATATTATCGCCATGTTCGACATCCATCCCCTGATGGCCTTGCCGAGATTATGATGTTTCAGAGCGGGTTGCTGATGGGTGGAAGATTCGACATACACGACCAGTTTAGGGAATTGCGGCTTGATGTCGATAACATGTCGTACGAGGAGCTGCTTGAGCTTGGTGAAAGGATTGGGCATGTCAGTACTGGGCTGAAAGAAGACGAGATGGGAAGGTGCATTAGAACAATGAAGCCCCTTGCTGTAAATGAGCTAACAACAACTCACTTGTTATCTCAAATGGATCGGAAGTGCAGCATCTGTCAGGAGGAGTATGATCCAGAGGATGAAATGGGTAAGCTGGAATGTGGGCATGGGTATCACGTAGAGTGTATAAAGCAGTGGCTTGCGCAGAAGAATGCGTGCCCGGTGTGTAAGACAGCGGCGGTGGGCCGTGGTTGA 1359 45.62 MQQHHHHLRKGGEKKRLKSLHNHSFSSPSSSSSSSAFKSGNGTKRFIKLNFFNVHAFLSFNSIHSLSLSFPCLRIMPVAPQTSTIGEHINLRRPRSHFSQPISESDPNPSIPSIIQSTRCKSTISSLLLSTFSNNSTTGANECLPSSIATNRKKNNFSSATFRGLGCTNAASQQVSVPAVIRTSADWEKKKTRKKKQKNSKNKTHQGIVDASHFHPNSSINSASCLDAQDVWCAPGIEFAADAAASVDCVVARRHASGRGKIDLEKINQRERSSLGGRRTVNPETLLYLDSDSDLPTARSFELSRSRYYRHVRHPSPDGLAEIMMFQSGLLMGGRFDIHDQFRELRLDVDNMSYEELLELGERIGHVSTGLKEDEMGRCIRTMKPLAVNELTTTHLLSQMDRKCSICQEEYDPEDEMGKLECGHGYHVECIKQWLAQKNACPVCKTAAVGRG 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7766129 7769909 - CmaCh13G010070.1 Cma13g01007 306834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01007 452 MobiDBLite consensus disorder prediction 22 37 - -
Cma13g01007 452 Pfam Ring finger domain 403 445 IPR001841 -
Cma13g01007 452 SMART ring_2 404 444 IPR001841 -
Cma13g01007 452 ProSiteProfiles Zinc finger RING-type profile. 404 445 IPR001841 -
Cma13g01007 452 MobiDBLite consensus disorder prediction 1 37 - -
Cma13g01007 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 450 IPR013083 -
Cma13g01007 452 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 80 447 IPR045191 GO:0061630
Cma13g01007 452 MobiDBLite consensus disorder prediction 1 17 - -
Cma13g01007 452 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 80 447 - -
Cma13g01007 452 SUPERFAMILY RING/U-box 390 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01007 - - - bhj:120083032 634.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01007 Cma18g00052 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01007 Cma-Chr13:7766129 Cma16g00414 Cma-Chr16:2064349 1.63E-26 dispersed
Cma13g01007 Cma-Chr13:7766129 Cma18g00052 Cma-Chr18:217902 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g278 . . . . Bpe12g00707 Bpe13g00364 Bma06g00053 . Cmo13g01045 Cmo18g00042 . . . . . Cpe20g00137 . . . . . . . . . . . . . . . . . Cone13ag0314 . Lsi02g00212 Csa01g00694 Chy12g01417 Cme12g01853 Blo13g00184 . Bda11g01777 . . . . Bma08g00004 . . . Cma13g01007 Cma18g00052 Car13g00842 Car18g00045 Cpe09g01128 . Bhi08g01262 . . Lac10g0265 . . . Cla04g01070 Cam04g1114 Cec01g1628 Cco01g1674 Clacu04g1140 Cmu04g1122 Cre01g1423 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004518 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01007 Cma_Chr13 FPKM 29.573605 31.057779 17.384804 16.250309 25.404524 24.616541 27.57052 8.350488 9.378589 8.850309