Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01011 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCCTCTTCTTCTTCTTCACAGTGGTGTGGTTTGATCTTCCGCTATGCTCCGCCGACGACGCCCACGAGGAATTCAAAGCTTGCAGTCTCTATTACAACTGCGGAGATTTGGTAAACGTCACGTATCCGTTTTGGGGGAATGAGCGGCAGGAATTCTGCGGCCGCCGTGAATTCAAGCTCAATTGCAAACACAACAAAACCACTACGATCGAAATCAGTTCTATTGAATTTCACGTTCTCAACATCAGCCGATCCAATCATACAATGACAATAGCAAGATCGGATCTCCGAACTGATTACTGCCCTAAAATCGAAATCAAAACGACGAGGATTGATTATCGTCTCTTCAAGTATTCTTTGAACGATCTGAATCTCTCTGTCTGGTACGATTGCCCGCTGCTACCTGGAATTCTCGACAATTACAGATTCACGTGCGGATCGGAGGGGGAAATAAGAGGGAGAGCGAATTACGCTTTAGAAACGGAAGCGCTGAATCGGAGTGGAAACATGAGCGGGTGTAGACTGAACATCGAAGTGACAATTACAAAAGAGGTATTCGAGGAAACACACAAGAACAGAACGATGGCGGTGGAGCAGGGTGTGAAAAGAGGATTTGATGTGGAATACGGGGATTTCTACACGGTGGCGTGCGAGGGGTGCAAGGAATACGGCGGCAAGTGTGGAAGGAACGCCACCCATCAGTTTCACTGCATTTGTGGCGATGGAGACATCCATCCTTTCGTTTGCAAGTCTCCTCCTCCTCCTGACGAGAAGTTTGAAGCTTGTGCTCCAAAATCCTGTGGGAAAGGACCAAATATCAGCTATCCTTTTTGGATAGCTCATTCGCACAGCCAGTTCTGTGGATTCCCTACCTTTCCTATCACCTGCAAACATGAATACCCAGTTATCAAAATTTCAGAAGAGGATTATATTATCAGAGAAATCTCCTATCAAACCCACTCTTTTCTTGTGGCAAATGCTGCGGTCTACGACCTCAAATGCCCTACTCCTCTTCATAACTTCACCCTCCACCGAACCCCATTCACTCACACTCCGGATCATATTGGCTTCTTCTTCTTTTACAACTGCACTTCCCTTCCTCCCAAGTATAGCTACCCAATTCGTTGTTCAAACACAACCAAACTCCATTCTTTTGCTGTTTTCCACGATGGATTTGTGGAGCTTATGAACTTCTCTGTCGATTCTTGTCAATCCTCGGTAGAGGTGCCTATAGACATTCCTAATCAGGACGATGATTTTTCTGGGTTGTTGAGGAAGAGTTATTCCGATGTCTTGAAGATGGGTTTCACTTTAAATTGGAGTGCCCAAAATTGTAGCAATTGTGAGACAAGTGGCGGGCGATGTGGGTTTGAAAGCAACGAGTTTGTTTGCTTTTGTCCTGATGGACCTCATCTACAAACCTGCAAACAGGGTAACTTTCTAGGAAATAAATCTTGCTTTGCTCTTGCTCGAATCTTTGCTCTGTTCTTCTATTTCTTTTGGTATACAATCTTTCCTAACGATTTGCTTGCCATGGCAGGAGAAAATGATGTTTGGAAGAAGTACGTCATAGGTTTTAGCTGTGGTTTTGGCGGGGTAATGATAATGAGCGTAGCCTTTTTCATCTGGTTTCGTTTGCACAAAAAGAAGCTTGCTCGTACTTATACTCCCTCCTCCTTTCTCCTACGAAACAATTCTAGTAATCTTCCTGCGAAGGAGCTTGAGAAAGGAGAAGATTACATGGGTGTGCCTTTGTTCTCTTACGAAGAGCTTGAAAAGGCCACCGACAGGTTTAATCCGGCCAAAGAACTTGGAGATGGCGGCTGTGGCAAACTTCCTGATGGACGTGAGGTCGCTGTTAAACGATTGTTTGAAAATAACTACAGAAGAGTTGAGCATTTCATGAATGAAGTTGAGATCCTTACTCGTTTGCGCCACCCACATCTTGTCACCCTTTATGGATGTACCTCTCGACACTGCCGTGAACTTCTGTTGGTTTATGAATTCATCCCAAACGGTACTGTTGCCGATCATCTTCACGGCGAACGAGCAAAACCCGGTGAGCTTCCATGGCATACAAGGTTGAAGATTGCCATTGAGACTGCAAGTGCTCTGGCTTTTCTCCATGCCTCTGAGACTATCCACCGTGATGTTAAAACTACCAACATTCTCCTCGACAGCAACTTCGGTGTTAAAGTCGCCGATTTCGGATTATCTCGGCTTTTTCCCACACAAGCCAGCCATGTTTCAACTGCACCACAAGGAACTCCTGGCTACTTAGATCCGGAGTATCACGAATGCTATCAACTTACGATTAAAAGCGACGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCTGCAGTTGATATCACTAGGCATAGGCATGAGATTAACCTGTGGACAATGGCAATCAATAAGATTGGGGGCGACGAGTTGCATGAATTTGTGGATCCATGTCTTGGATTTGAAACGGATGAAAGAGTTAGAGACATGATATGTGGAGTTGCAGAGTTGGCATTTCAATGCTTGCAGAGTGTGAAAGACACAAGGCCGACAATGTCGGAGGCTTTGGAAATTCTGAAGAACATTGAGAGTCAGCATAGTGGGAAAGGAAAAACAGAAGAAATAAAGGTTACAGGAGAAGAGGATGTGGTGGTGAAGGGTGAGTTAGTGCCGGAATCTCCAGATTCCGTTGTGGTGCCTTGGATGAGCAAATCTTCAACCCCGAATTGCAGTGGCTGA 2784 45.19 MKTSVPLFLFLFFFFTVVWFDLPLCSADDAHEEFKACSLYYNCGDLVNVTYPFWGNERQEFCGRREFKLNCKHNKTTTIEISSIEFHVLNISRSNHTMTIARSDLRTDYCPKIEIKTTRIDYRLFKYSLNDLNLSVWYDCPLLPGILDNYRFTCGSEGEIRGRANYALETEALNRSGNMSGCRLNIEVTITKEVFEETHKNRTMAVEQGVKRGFDVEYGDFYTVACEGCKEYGGKCGRNATHQFHCICGDGDIHPFVCKSPPPPDEKFEACAPKSCGKGPNISYPFWIAHSHSQFCGFPTFPITCKHEYPVIKISEEDYIIREISYQTHSFLVANAAVYDLKCPTPLHNFTLHRTPFTHTPDHIGFFFFYNCTSLPPKYSYPIRCSNTTKLHSFAVFHDGFVELMNFSVDSCQSSVEVPIDIPNQDDDFSGLLRKSYSDVLKMGFTLNWSAQNCSNCETSGGRCGFESNEFVCFCPDGPHLQTCKQGNFLGNKSCFALARIFALFFYFFWYTIFPNDLLAMAGENDVWKKYVIGFSCGFGGVMIMSVAFFIWFRLHKKKLARTYTPSSFLLRNNSSNLPAKELEKGEDYMGVPLFSYEELEKATDRFNPAKELGDGGCGKLPDGREVAVKRLFENNYRRVEHFMNEVEILTRLRHPHLVTLYGCTSRHCRELLLVYEFIPNGTVADHLHGERAKPGELPWHTRLKIAIETASALAFLHASETIHRDVKTTNILLDSNFGVKVADFGLSRLFPTQASHVSTAPQGTPGYLDPEYHECYQLTIKSDVFSFGVVLVELISSKPAVDITRHRHEINLWTMAINKIGGDELHEFVDPCLGFETDERVRDMICGVAELAFQCLQSVKDTRPTMSEALEILKNIESQHSGKGKTEEIKVTGEEDVVVKGELVPESPDSVVVPWMSKSSTPNCSG 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7785800 7790510 + CmaCh13G010110.1 Cma13g01011 306838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01011 927 Pfam Wall-associated receptor kinase C-terminal 405 478 IPR032872 -
Cma13g01011 927 Pfam Wall-associated receptor kinase C-terminal 154 251 IPR032872 -
Cma13g01011 927 Gene3D Transferase(Phosphotransferase) domain 1 679 900 - -
Cma13g01011 927 SUPERFAMILY Protein kinase-like (PK-like) 589 877 IPR011009 -
Cma13g01011 927 Pfam Wall-associated receptor kinase galacturonan-binding 271 334 IPR025287 GO:0030247
Cma13g01011 927 Pfam Wall-associated receptor kinase galacturonan-binding 37 102 IPR025287 GO:0030247
Cma13g01011 927 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 265 918 IPR044652 -
Cma13g01011 927 SMART serkin_6 607 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01011 927 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 253 IPR044652 -
Cma13g01011 927 Gene3D Phosphorylase Kinase; domain 1 580 678 - -
Cma13g01011 927 ProSiteProfiles Protein kinase domain profile. 607 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01011 927 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 265 918 - -
Cma13g01011 927 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 9 253 - -
Cma13g01011 927 Pfam Protein tyrosine and serine/threonine kinase 624 841 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01011 Cma-Chr13:7785800 Cma13g01013 Cma-Chr13:7795485 7.31E-62 dispersed
Cma13g01011 Cma-Chr13:7785800 Cma13g01012 Cma-Chr13:7790968 2.58E-10 tandem
Cma10g00308 Cma-Chr10:1393265 Cma13g01011 Cma-Chr13:7785800 9.33E-157 wgd
Cma11g00286 Cma-Chr11:1425816 Cma13g01011 Cma-Chr13:7785800 7.82E-165 wgd
Cma13g01011 Cma-Chr13:7785800 Cma18g01001 Cma-Chr18:8416763 4.80E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69031 PF07714 PK_Tyr_Ser-Thr 2.10E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01011 - - cmax:111495731 865.529