Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01012 ATGCAAGCAGGAAAGCAACTTTTTCCTTTTTCTTTTCATTTTTGGTCCAGCGTCACGGAAATGACACCTTCCGTCCCTCTCTTCCTCTTCTTCTTCTTCACAATCGTGTGGCATGATCTTCCGCTATGTTTCGGCGACGGCACAGTCGTTGAATTTAAAGCTTGCGATGTCTATTACAACTGCGGAGATTTGGTAAACATCATGTATCCGTTCTGGGGGAATGAACGGCCGGAATTTTGCGGGCGGCGAGAATTCGAGCTCAATTGCAAAGACAACAAAACCACTACGATCGAAATCAGTTCTATTGAATTTCACGTTCTCAACATCAGCCGATCCAATCATACAATGACAATCGCAAGATCGGATCTCCGAACTGATTACTGCCCTAAAATCGAAATCAAAACGACGACGATTGATTATCGTCTCTTCAAGTATTCTTTGAACGATCTGAATCTCTCTGTCTGGTACGATTGCCCGCTGCTACCTGGAATTCTCGACAATTACAGATTCACGTGCGGATCGGAGGGGGAAATAAGAGGGAGAGCGAATTACGCTTTCGAAACGGAAGCGCTGAATCGGAGTGGAAACATGAGCGGGTGTAGACTGAACATCGAAGTGACAATTACAAAAGAGGTATTCGAGGAAACACACAAGAACAGAACGATGGCGGTGGAGCAGGGTGTGAAAAGAGGATTTGATGTGGAATACGGGGATTTCTACACGGTGGCGTGCGAGGGGTGCAAGGAATACGGCGGCAAGTGTGGAGGGAACGCCACCCATCAGTTTTACTGCATTTGCGGCGATGGAGACATCCATCCTTACGTTTGCACGTCTCCTCCTGATACAGAGCAATCAATTCCTAGAGGGGAGATCATAATAGGTGCAACTATTTCTGGAACCGTCATTCTCTCTGTTATCATCATCTCCATCTACTACAAGAGAAGAAGCATCTCAAACAACGACAAAATTAAGGAAATTATAAGGAAATATTCCACGCAAACACCCAAGCGATATACTTACTCAAAGCTGAAGAAAATCACAGGCTCTTTCAACAACAAGATTGGCCAAGGAGGGTTTAGCTCTGTCTACAAAGGAAAGCTACCCGACGGCCGCGATGTGGCTGTGAAGCTTTTGAATGAATCCAAATCAAATGGTGAAGATTTTATGAACGAAGTTGTTAGCTTCGCCAAAACTTCCCATGTAAATATAGCCACACTCTTAGGTTTCTGCTACGAGAGGAACAAAAGAGCTTTGATTTATGATTATATGGCTAAAGGGTCACTAGATAAATACATTTCCAGCAACAGGAATCAAGAAAAGGGCGAGAAGTTGGATTGGAACACACTCTACAATATTGTCATCGGCGTGGCACGAGGCTTGGAGTACTTGCACAGTGGCTGCAACACAAGGATCTTGCACTTCGACATCAAGCCACACAACATACTCTTGGATGATGATTTCCGCCCCAAAATCACTGATTTTGGGCTGGCCAAGCAATGCAGGGCCAAGGAGAGTCATGTGTCGATGACATGTGTGAAAGGGACAATAGGGTTCATAGCGCCAGAGATAATATTTAGGAATATTGGCAAAGTTTCTCATAAGTCTGATGTTTATAGTTATGGGATGTTGGTTCTTGAGATGGTGGGTGAGAGAAAGAGTCCCAATCAAGGAGTGGAGCAGAGCAGCGATGAGTACTTTCCTGATTGGATATATAAGGATCTTACACAAAGTGAAATTCATGGGGGCTGTTGGTGGGGAAACACAGAGGAAGAAGAAGAAATGGCAAGAAAAATGATCATTGTGGGGTTGTGTTGTATTCAGACATTGCCCAACGACAGGCCGTCGATGACCGACACGGTGTCGATGTTGGAAGGCAGTGTTGATGGCTTACAAATTCCACCAAAACCTGACTTGTTCGGACCTCCTGCCACTGATCTACTCCAAGTTGCTGCTGCTGCTGCTTCTTCTTCTTCCACCTCTCCAGACAGTTTAAATCTACCGCTAGCAAATATGCTGGTATGA 2022 44.96 MQAGKQLFPFSFHFWSSVTEMTPSVPLFLFFFFTIVWHDLPLCFGDGTVVEFKACDVYYNCGDLVNIMYPFWGNERPEFCGRREFELNCKDNKTTTIEISSIEFHVLNISRSNHTMTIARSDLRTDYCPKIEIKTTTIDYRLFKYSLNDLNLSVWYDCPLLPGILDNYRFTCGSEGEIRGRANYAFETEALNRSGNMSGCRLNIEVTITKEVFEETHKNRTMAVEQGVKRGFDVEYGDFYTVACEGCKEYGGKCGGNATHQFYCICGDGDIHPYVCTSPPDTEQSIPRGEIIIGATISGTVILSVIIISIYYKRRSISNNDKIKEIIRKYSTQTPKRYTYSKLKKITGSFNNKIGQGGFSSVYKGKLPDGRDVAVKLLNESKSNGEDFMNEVVSFAKTSHVNIATLLGFCYERNKRALIYDYMAKGSLDKYISSNRNQEKGEKLDWNTLYNIVIGVARGLEYLHSGCNTRILHFDIKPHNILLDDDFRPKITDFGLAKQCRAKESHVSMTCVKGTIGFIAPEIIFRNIGKVSHKSDVYSYGMLVLEMVGERKSPNQGVEQSSDEYFPDWIYKDLTQSEIHGGCWWGNTEEEEEMARKMIIVGLCCIQTLPNDRPSMTDTVSMLEGSVDGLQIPPKPDLFGPPATDLLQVAAAAASSSSTSPDSLNLPLANMLV 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7790968 7794826 + CmaCh13G010120.1 Cma13g01012 306839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01012 673 Gene3D Transferase(Phosphotransferase) domain 1 423 631 - -
Cma13g01012 673 PANTHER RUST RESISTANCE KINASE LR10-RELATED 49 644 IPR045874 GO:0004672
Cma13g01012 673 PANTHER - 49 644 - -
Cma13g01012 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Cma13g01012 673 Pfam Protein kinase domain 351 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01012 673 ProSiteProfiles Protein kinase domain profile. 348 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01012 673 Gene3D Phosphorylase Kinase; domain 1 320 422 - -
Cma13g01012 673 SUPERFAMILY Protein kinase-like (PK-like) 324 623 IPR011009 -
Cma13g01012 673 Pfam Wall-associated receptor kinase C-terminal 172 269 IPR032872 -
Cma13g01012 673 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Cma13g01012 673 SMART serkin_6 348 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01012 673 Pfam Wall-associated receptor kinase galacturonan-binding 55 120 IPR025287 GO:0030247
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01012 Cma-Chr13:7790968 Cma15g00892 Cma-Chr15:4570537 5.43E-72 dispersed
Cma13g01011 Cma-Chr13:7785800 Cma13g01012 Cma-Chr13:7790968 2.58E-10 tandem
Cma13g01012 Cma-Chr13:7790968 Cma13g01013 Cma-Chr13:7795485 2.56E-114 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69032 PF00069 Pkinase 3.90E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01012 - - cmax:111495731 1312.36