Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01013 ATGAAATCCTTCTTCTTCTTCTTCCTCTTCACGTTTCATCTATCGACATGCTTCAGCGACAACGCCCTCGATGCATTCAAAGATTGCGGTGTGAGTTACAATTGTGGAGAATTGGTAAACATCACGTACCCATTTTGGGGGAATGAGAAGCAGAGTTCTTGTGGGCGGAAAGAATTCAAACTCAACTGCAAAAGCAACCGAACCACCACGACTTACATCAATTCTCTGGAATACAACGTTCTGGAAATCAACCAATCGAATAATACAATGAGGATCGCAAGATCAGACCTCTTCGATAATTACTGCCCACGAAATCAAATCCAAGTGGCCTCTATAGATCACCATCCGTTTGCGTATTCTTCCAGAAATCAGAACATCTCGGTGGGGTATAATTGCTCGCCGGATAACGAATTTCTAATTTCGAAATACAAGTTTTCGTGCGGTGGGGAATGGCAAAGGCGAGGGAGAGTGAACTACGCTTTTGAACCGTCGGCGGCGGTTTATTCAAAGCTTGCGGAGTGTGAAATGAAGATAGAAGTGATGGTTACGATAAAGGAGTTGAAGGAAGGTTTAAAGAACAGGACGAGCTTGGTGGAGACGGCTGTGAAAGGAGGGTTCGAGGTGGAGTACGAGAATTGGTATAAGGGAGCGTGTGATTCATGCAACGGAAGTGGAGGCAATTGCGGCGGAAACGGGACGTACCCATTTTACTGCATTTGTAGAAACGAAGTTGCAAATCCTTATGCCTGTGATGCCATTGCTGCGCCTCCTCGCCCTCCTCACCCTTCTCACCCTGAAAACCCAAATGATACATGGAAGAAGGTCGTCATAGGTGCTGGATCTGGTATTGGAGGCATTGTGATGATGAGTATAATCTTTTTCATCAGGCTTCGTATGCACAAAAAGAAGCATCAAAACTATTCTTGTGATCGTCCGATGAAGGAGCTTGAGAAAATAGAACATTACATGGCTCTATCTCTTTTCTCTTATCACGAACTTGTAAAAGCTACAGACAAATTCAACCCAGCTAACGAACTTGGAGATGGTGGCTTTGGCACTGTCTACTATGGCAAACTCCGAGATGGGCGTGAGGTCGCTGTTAAACGATTGTTTGAAAATAACTATAGAAAAGTTGAGCAATTCATGAATGAGGTTGAGATGCTCACTCGTTTGCGCCACCCACATCTTGTCACCCTTTATGGATGCACATCTCGACGCTCCCGTGAGCTCTTGTTGGTGTATAAGTTCATTCCGAATGGTACTGTGGCCGATCATCTTCATGGCAACCGAGCAAGATCAGGTGAGCTTCCATGGCTTACAAGGTTGAAGGTTGCCATAGAGACTGCAAGTGCTCTGGCTTTTCTCCATGCTTCTGAGACTATCCACCGTGATGTTAAAACCACCAACATTCTCCTTGACAACAATTTCGGTGTTAAAGTCGCTGATTTCGGACTATCTCGCCTTTTTCCTACACAAGCTAGCCATGTTTCAACTGCACCACAAGGCACTCCTGGCTATATTGATCCAGAGTATTATGAGTCTTATCAACTTACGAACAAAAGCGATGTCTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCGAAGCCTGCAGTTGATATCACTAGGCACAGGCATGAGATTAACCTGTCAACAATGGCTATCAATAAGATCCAAAACGACGAATTACATGACTTCGTAGACCCATCTCTCGGATTTAAAACCGATCAAAGAATCAGAAATATGATATGCGGAGTTGCCGAGTTAGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGGCCGTCAATGATGGAAGCTCTAGAAATTCTAAGGAATATAGAGAATCGAAGTTGTGGCACAGGGAAAGCACCATTAGTGCCAGAATCCCCAGACTCCGTCACTGTGCTTTGGATTAGCAAAACTTCCACACCAAACGGTAGTGGGTGA 1953 44.65 MKSFFFFFLFTFHLSTCFSDNALDAFKDCGVSYNCGELVNITYPFWGNEKQSSCGRKEFKLNCKSNRTTTTYINSLEYNVLEINQSNNTMRIARSDLFDNYCPRNQIQVASIDHHPFAYSSRNQNISVGYNCSPDNEFLISKYKFSCGGEWQRRGRVNYAFEPSAAVYSKLAECEMKIEVMVTIKELKEGLKNRTSLVETAVKGGFEVEYENWYKGACDSCNGSGGNCGGNGTYPFYCICRNEVANPYACDAIAAPPRPPHPSHPENPNDTWKKVVIGAGSGIGGIVMMSIIFFIRLRMHKKKHQNYSCDRPMKELEKIEHYMALSLFSYHELVKATDKFNPANELGDGGFGTVYYGKLRDGREVAVKRLFENNYRKVEQFMNEVEMLTRLRHPHLVTLYGCTSRRSRELLLVYKFIPNGTVADHLHGNRARSGELPWLTRLKVAIETASALAFLHASETIHRDVKTTNILLDNNFGVKVADFGLSRLFPTQASHVSTAPQGTPGYIDPEYYESYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNDELHDFVDPSLGFKTDQRIRNMICGVAELAFQCLQSVRDTRPSMMEALEILRNIENRSCGTGKAPLVPESPDSVTVLWISKTSTPNGSG 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7795485 7797810 + CmaCh13G010130.1 Cma13g01013 306840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01013 650 Gene3D Transferase(Phosphotransferase) domain 1 417 621 - -
Cma13g01013 650 ProSiteProfiles Protein kinase domain profile. 340 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01013 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 4 636 - -
Cma13g01013 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 636 IPR044652 -
Cma13g01013 650 SMART serkin_6 340 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01013 650 Gene3D Phosphorylase Kinase; domain 1 310 416 - -
Cma13g01013 650 Pfam Wall-associated receptor kinase galacturonan-binding 34 94 IPR025287 GO:0030247
Cma13g01013 650 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Cma13g01013 650 Pfam Wall-associated receptor kinase C-terminal 166 242 IPR032872 -
Cma13g01013 650 Pfam Protein tyrosine and serine/threonine kinase 344 609 IPR001245 GO:0004672|GO:0006468
Cma13g01013 650 SUPERFAMILY Protein kinase-like (PK-like) 314 612 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01013 - - - mcha:111008789 882.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00308 Cma13g01013 CCT
Cma11g00286 Cma13g01013 CCT
Cma10g00308 Cma13g01013 ECH
Cma11g00286 Cma13g01013 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00400 Cma-Chr1:2027839 Cma13g01013 Cma-Chr13:7795485 9.48E-162 dispersed
Cma13g01011 Cma-Chr13:7785800 Cma13g01013 Cma-Chr13:7795485 7.31E-62 dispersed
Cma13g01013 Cma-Chr13:7795485 Cma14g01176 Cma-Chr14:9379243 1.82E-176 dispersed
Cma13g01012 Cma-Chr13:7790968 Cma13g01013 Cma-Chr13:7795485 2.56E-114 tandem
Cma13g01013 Cma-Chr13:7795485 Cma18g01002 Cma-Chr18:8418549 6.60E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69033 PF07714 PK_Tyr_Ser-Thr 9.20E-46 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01013 Cma_Chr13 FPKM 0.0 0.0 0.0 0.0 1.338738 1.076321 1.027094 0.0 0.0 0.065294