Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01015 ATGTCGCCCAAGAGATTGTTCTGCGAAACAGAGCCGTGTTTAGAACAGCCTTTTGAGAAGAAGCGCCCGCGTCTGACGTTTGCGTCGATAATCGGGGATGTGGTTATGGTTAATTCCCAAAATCATTTGTTGAAAGCATTGGAGCCCTTGCTTAGACGAGTGGTGAATGAGGAAGTTGATCGATGTTTATTGCGATATTCAAGGTTGTTACCTAGGGCATCTTCGTTGAGGATTCAGGCTCTCGAGCCTTCCAGTTTCTTATTGTATTTTGTGAATAATCTTCCCTCTACCATTTTTACTGGAAGTAAGATTACAGATGTTGAAAGTCAGCCACTCCGGATCGCCGTCGAGGCCGGCGCGGATAATCCGGCATTTCAGGTATATTCGGCCATGAAAATTGAAATTGTGGTACTGGATGGCGACTTTGCAAGCGGCGATAAACAGGATTGGACGGCGGAGGAATTCAATGCCAGCATTGTGAAGGAGAGGTCTGGAAAGAGGCCGCTGCTTCATGGTGAAATGAACATAACTCTCCGCGACCGCGCTGCAACCATCGGTGACATTGAATTCACCGATAACTCAAGTTGGATTCGGAGCCGGAAATTCCGGCTGGGTGCCCGAATTGTTGACTGGTCAGATTCTGATAAGAATCGCCCCCGGATCCGGGAAGCCATAACCGAACCGTTTGTTGTCAAGGATCACCGCGGAGAATTGTACAAGAAGCATTATCCACCAATGCTGCATGACGAAGTTTGGAGGCTGGAGAAGATAGGAAAAGAGGGAGTCTTTCACAAGAAATTAAGCAATTACAATATCAAGACAGTTCAAGAATTCTTAAAACTCTTCACAATTGACCCACAAAAGCTAAGAAGGATTTTAGGGGTAGGAATGTCAGAAAGGATGTGGAAAGCAACGGTGAAACACGCAAAGACTTGTGAATTGGGAAACAAGGTGTATATGTTCCGTGCACCTAATGTCCTGCTGATCTTGAATCCTATTTGCGAAGTCGTAAGAGCCATGATCGATGACCAAATCTACTCATCTCCAGACCTTCCTAATATCCCCCGGGAGTATTTGAATAATTTGAGTAGACAAGCGTTCGATAACTGGCATTCGTTACAAGACTTTGAAGGCAATTTCAGAGAACCTCCCCTAATAACACAAGGAAATGAAGAAGCCAGTGATCATATAATTAGAAAATCATTGTTTCGAAGTTGCGAGTTGATGAGGGAAGAAGTTGAATTCCGAGATTGGAATTCAAATTCAGATCAGTTTATTTCTACACCAAATTTTCATTATAATTATGGATAG 1311 43.86 MSPKRLFCETEPCLEQPFEKKRPRLTFASIIGDVVMVNSQNHLLKALEPLLRRVVNEEVDRCLLRYSRLLPRASSLRIQALEPSSFLLYFVNNLPSTIFTGSKITDVESQPLRIAVEAGADNPAFQVYSAMKIEIVVLDGDFASGDKQDWTAEEFNASIVKERSGKRPLLHGEMNITLRDRAATIGDIEFTDNSSWIRSRKFRLGARIVDWSDSDKNRPRIREAITEPFVVKDHRGELYKKHYPPMLHDEVWRLEKIGKEGVFHKKLSNYNIKTVQEFLKLFTIDPQKLRRILGVGMSERMWKATVKHAKTCELGNKVYMFRAPNVLLILNPICEVVRAMIDDQIYSSPDLPNIPREYLNNLSRQAFDNWHSLQDFEGNFREPPLITQGNEEASDHIIRKSLFRSCELMREEVEFRDWNSNSDQFISTPNFHYNYG 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7800931 7803356 - CmaCh13G010150.1 Cma13g01015 306842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01015 436 PANTHER PROTEIN SAR DEFICIENT 1 1 394 - -
Cma13g01015 436 Pfam Calmodulin binding protein-like N-terminal domain 88 234 IPR046831 -
Cma13g01015 436 Pfam Calmodulin binding protein C-terminal domain 317 375 IPR046829 -
Cma13g01015 436 Pfam Calmodulin binding protein central domain 246 312 IPR046830 -
Cma13g01015 436 PANTHER OS02G0177800 PROTEIN 1 394 IPR012416 GO:0005516
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01015 - - - bhj:120084202 669.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01151 Cma-Chr10:8165356 Cma13g01015 Cma-Chr13:7800931 5.61E-56 dispersed
Cma11g00408 Cma-Chr11:1994432 Cma13g01015 Cma-Chr13:7800931 3.41E-100 dispersed
Cma12g01041 Cma-Chr12:8262200 Cma13g01015 Cma-Chr13:7800931 1.79E-60 dispersed
Cma13g01015 Cma-Chr13:7800931 Cma10g01153 Cma-Chr10:8180611 1.91E-51 dispersed
Cma13g01015 Cma-Chr13:7800931 Cma18g00048 Cma-Chr18:196723 3.31E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g292 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0732 . . Cone19ag0282 . . . . . . . . . . . . . . . Cma13g01015 . . . . . . . . . . . . . . . . . . . . Csa01g00177 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002933 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 2 1 2 1 1 1 1 1 1 1 3 6 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01015 Cma_Chr13 FPKM 63.836658 69.884125 2.096262 2.067203 7.381873 5.808889 7.224411 0.748778 0.713289 0.693878