Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01017 ATGGCGGGTTCCTCTCTCATGGAGACTCTCTTTCAGCGAACTCTCGATGACCTTATCAAAGCCCTCCGCCTCCAACTCCTCGGAGAGTCTGCTTTTATCTCCAAAGCCATGGACGAGATTCGCCGCGAGATCAAATCTACGGACCCTCAAACTAAGTCCACCGCTCTGCAAAAGCTCTCCTATCTCAGCTCCCTTCACGGTATCGATATGAATTGGGCTGCCTTTCATGTCGTCGAGGTTATGTCAGCCTCTCGCTTCGCCCAAAAGAAGATCGGGTACCTCGCTGCCTCCCAATCGTTTCACGAAGCCACCCCAGTTCTCCTCCTCATTACCAACCAGCTCCGGAAGGATTTAACTAGCACAAACGAATTCGAGGTCAGCCTTGCTCTTGATTGTTTGTCCAGAATTGCTACTATCGATCTTGCTCGGGACTTGACCCCTGAGATTTTTACATTGTTGTCGAGTACTAAGCCCTTCGTTAGAAAGAAGGCAATTAGTGTGGTTTTGAGGGTTTTTGGTAAATTCCCAGATGCTGTTAGGGTGTGTTTTAAGCGTTTGGTTGAGAATTTAGATAGTTCGGATCCCCGGATTTTGTCTGCTGTTGTTGGGGTCTTTTGCGAGCTTACTTCCCAGGACCCTAGATCTTACCTTCCTTTGGCACCCGAATTTTATAGGATTTTGGCCGATAGCAAGAACAATTGGGTGCTCATTAAGGTCTTGAAGATATTTAAAAATCTTGCTCCATTGGAGCCTAGACTGGCTAGGAAAATTGTTGAACCTATAACTGAGCATATGAGAAGAACAGATGCTAAATCCTTGATGTTTGAGTGCATTAGGACTGTAGTGACTAGCTTGTCTGACTTTGAATCAGCAGTTAAACTTGCTGTTGAGAGAACTCGAGAATTTTTGGTTGACGACGATCCGAATCTAAAGTATCTTGGATTGCATGCTCTTTCAATCCTTGTGCCAAAACACTCGTGGGCTGTTTTGGAAAATAAAGAGGTTGTAATTAAGTCTCTAAGTGATGTGGATCCAAATGTTAAACTTGAGTCCTTGCGGCTTGTGATGGCTATGGTTTATGATAATAATGTAGCTGAAATTTGCAGAGTTTTGGTGAACATCGCGATTAAATCTGATCCTGAGTTTTGTAATGAAATTCTTGGGTCCATATTAGCTACATGTGGTGAAAATGTGTATGAAATTGTTATTGACTTTGATTGGTATGTGTCGCTTCTTGGAGAAATGTCGAGGATCCCACATTGCCAAAAGGGAGGGGAAATTGAAACTCAGCTTATAGATATTGGTATGAGGGTGAAGGATGCAAGGCCTACTCTTGTCATGGTTGGCCGTGATCTGCTGATTGATCCAGCGTTACTCGGTAATCCTTTCATGCATAGGATACTGTCAGCTGCTGCTTGGGTGTCAGGCGAATACGTGCAGTTTTCAGGCAAGCCATTCGAGCTCCTAGAGGCATTGTTACAACCTCGCTGTAATCTCTTGCCACTGTCAGTTAGAGCAGTTTATGTTCAGTCAGCGTTTAAAGTGTTGGTTTTTTGTTTAAATTCTTACATTCAAGAGCAATACGTTGAGTCCTCTTCGTATGTTGATACTTTGATAGAGAATGATTCAGAATCGATCTCTGCCAGGGAATGCCAAGATGCTTCTAATCTTCATGAACAGGTCGAAGAGTTCAACTCAAGGGAGACACTGTCTCGTGTCCAGACTTGTACGTCTGCATCATTGGAGGATAATGGTTCGTCTATTGGATCGATAGCTGAGTTGTTGAATTTTATTCAGTTTTCTTTGGGGCCTTTAACATGGAGCCATGATGTCGAATTGCTTGAGAGGTCTAGAAACTTGCTCAATTTTATTGAGCTAATTAGAATACAGATTCCTGATGGTTTAAATCAAAAGGATGGGAGTTCAGAAATGGAACTTGCTGAAATCTCCAAAATAGTTGAACTGATTCTTGATGCTTTCTCCGATGACTTTGGCCCCATCTCAGTAAATGCTCAAGAAAGAGTTCCAATTCCTGAAGGATTGATATTCAAGGAGAATCTTGATGACTTGGAAATGATATGTAGTGACACTCAGCTACCAGAAAGCTCCTTTTCTTTTGGAAGTTCTCTCTACGAGGAAAGGCTTGATTCATCTCTATTATCTCAACAAAGCCAGCAAGTGTCTGAACCATCAAACGCAACCACATCTCTTCTCTCCGAACATCGTAAGCGGCATGGACTGTATTATCTTCCATCAGATAAGACTGATGATGCCTCTAACGATTATCCACCGGCCAACGAACTCAAGTTACAAGATCATCTGGATGACGACGCAGCCCACCTTGTAAAGCTTGCAGAACGGTCACTCGCATTAAAGAAAAAGTCTACTTCAGCCAAGCCTAGGCCTGTGGTAGTGAGATTGGATGAAGGAGATGAATTGCCGGTTATGAGGAAGAAGCCTCAGTCGAAGGATGAACAGCTTTCCGATGCAATACGCAATGTTCTTGTGGGTAGTGATGTAATGCCTACTTCCTCACAGACAAACCAATCTTCCAAACCCTCTAGCAGGAGAAAAGGAAAGGAGAAACAGAATGCTGATAATCCTTCTGAATCAAAAGAAAACTTGGGTGATGTTGAAGAGCAATCCAATACGGTAGATACAAGTTCGAGAAGAACGCATCGACGTCATGGAAAAGAAGGCAAACAATCAAGTCATGAAAAGAGAAGTGAGAAAAAAGATCAAGTTCATAAGAAAGGCAAGCGAATGAGTAGTCAGCAACACAGTAGGCATAAAGCTAAACAAAGTGGAGATGCTTCATTTCCTGTGGCTTCACAGACATCAGAAGCCAAAACCCAAATGGCTAATGATCAGCTCAAGTATTCTCCATTACCCTCCAAGCTGCACCCCAGTTCTCCATCTCAGTTTTCTCAAATCTTCCGTTTTCTCTTCTTACTTATTGGCTTCTCCATTGGAATGGCCATTGGTTTGAACCTCAACAGCTTCTCCTCATTTAATATCTTTTCCTTTCCATCTTCACCATCAACCCTCTTGTTTCTCAAACCACAACAACCTCCCTCGTCACCCCCTCCATCTCAACCACCGTCGCCATTGTTGCCGCCAGTACCATTGCCGTCTCCTGAGTTTTTCGACCCAAATGTAGAGCCACCTCTGATGCACAGAATGACAGATGATGAAGTCTTCTGGAGAGCATCCATGGTTCCACTGATCAAAGAATTCCCATATGAACGTGTGCCAAAAGTGGCTTTCATGTTTCTGATAAAGGGGCCGTTGCCTTTAGCTCCTTTGTGGGAAATGTTCTTCAAAGGCCATGAAAGGTTGTTTTCAATTTATGTGCACACCCATCCGTCCTACAATGTTTCTTCTTCTCTGCCTCCTGGCTCTGTCTTCTATGGAAGAAGAATCCCAAGCCAGCCGGTGCAATGGGGCAGACCCTCCATGATCGACGCCGAGCGCCGCCTTCTAGCCAACGCCCTTCTCGACTTCTCTAATGAAAGATTCATCCTACTGTCTGAAACCTGCATCCCTCTCTACAACTTCACTACTGTCTACAACTACCTCCTCAATTCCGAGCACACCTTTGTTTCCTCCTACGACGATCCCCGAAAAATTGGCCGCGGTCGTTACAACCCTCAAATGTTTCCGACTGTGGCGATCGCGGACTGGCGAAAAGGATCCCAATGGTTTGAAGTCGATCGAACGGTGGCCAGCGAGATAATCTCCGACAAAACATATTACCCTGTTTTCCGGAACCATTGCGGGCCGCCGTGTTACATGGACGAGCATTATATTCCTACGTTGGTTAATATTGTTTTGCCGGACCGGAACTCCAACAGAACCGTTACTTGGGTTGATTGGTCGAAAAATGGTCCGCATCCCGGCAGATTTGGGAGGCGGGAAATCTCGGTCGAGCTTTTGAGCAAGGTGCGGTTCGGTTTTAATTGTACTTATAATGGAAACGACACCGTCTCCCTATGCTTTCTGTTTGCTCGGAAATTCATGCCGGATTCCTTACAACCTCTGCTGAAGATTTGGCCATCTCTGTTGGAAGGTTTGGTTTAA 4080 44.46 MAGSSLMETLFQRTLDDLIKALRLQLLGESAFISKAMDEIRREIKSTDPQTKSTALQKLSYLSSLHGIDMNWAAFHVVEVMSASRFAQKKIGYLAASQSFHEATPVLLLITNQLRKDLTSTNEFEVSLALDCLSRIATIDLARDLTPEIFTLLSSTKPFVRKKAISVVLRVFGKFPDAVRVCFKRLVENLDSSDPRILSAVVGVFCELTSQDPRSYLPLAPEFYRILADSKNNWVLIKVLKIFKNLAPLEPRLARKIVEPITEHMRRTDAKSLMFECIRTVVTSLSDFESAVKLAVERTREFLVDDDPNLKYLGLHALSILVPKHSWAVLENKEVVIKSLSDVDPNVKLESLRLVMAMVYDNNVAEICRVLVNIAIKSDPEFCNEILGSILATCGENVYEIVIDFDWYVSLLGEMSRIPHCQKGGEIETQLIDIGMRVKDARPTLVMVGRDLLIDPALLGNPFMHRILSAAAWVSGEYVQFSGKPFELLEALLQPRCNLLPLSVRAVYVQSAFKVLVFCLNSYIQEQYVESSSYVDTLIENDSESISARECQDASNLHEQVEEFNSRETLSRVQTCTSASLEDNGSSIGSIAELLNFIQFSLGPLTWSHDVELLERSRNLLNFIELIRIQIPDGLNQKDGSSEMELAEISKIVELILDAFSDDFGPISVNAQERVPIPEGLIFKENLDDLEMICSDTQLPESSFSFGSSLYEERLDSSLLSQQSQQVSEPSNATTSLLSEHRKRHGLYYLPSDKTDDASNDYPPANELKLQDHLDDDAAHLVKLAERSLALKKKSTSAKPRPVVVRLDEGDELPVMRKKPQSKDEQLSDAIRNVLVGSDVMPTSSQTNQSSKPSSRRKGKEKQNADNPSESKENLGDVEEQSNTVDTSSRRTHRRHGKEGKQSSHEKRSEKKDQVHKKGKRMSSQQHSRHKAKQSGDASFPVASQTSEAKTQMANDQLKYSPLPSKLHPSSPSQFSQIFRFLFLLIGFSIGMAIGLNLNSFSSFNIFSFPSSPSTLLFLKPQQPPSSPPPSQPPSPLLPPVPLPSPEFFDPNVEPPLMHRMTDDEVFWRASMVPLIKEFPYERVPKVAFMFLIKGPLPLAPLWEMFFKGHERLFSIYVHTHPSYNVSSSLPPGSVFYGRRIPSQPVQWGRPSMIDAERRLLANALLDFSNERFILLSETCIPLYNFTTVYNYLLNSEHTFVSSYDDPRKIGRGRYNPQMFPTVAIADWRKGSQWFEVDRTVASEIISDKTYYPVFRNHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVELLSKVRFGFNCTYNGNDTVSLCFLFARKFMPDSLQPLLKIWPSLLEGLV 1359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7809539 7814790 - CmaCh13G010170.1 Cma13g01017 306844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01017 1359 MobiDBLite consensus disorder prediction 1018 1037 - -
Cma13g01017 1359 MobiDBLite consensus disorder prediction 838 853 - -
Cma13g01017 1359 MobiDBLite consensus disorder prediction 938 952 - -
Cma13g01017 1359 SUPERFAMILY ARM repeat 30 624 IPR016024 -
Cma13g01017 1359 MobiDBLite consensus disorder prediction 836 952 - -
Cma13g01017 1359 MobiDBLite consensus disorder prediction 1022 1037 - -
Cma13g01017 1359 Pfam Core-2/I-Branching enzyme 1087 1315 IPR003406 GO:0016020|GO:0016757
Cma13g01017 1359 Gene3D - 4 626 IPR011989 -
Cma13g01017 1359 MobiDBLite consensus disorder prediction 854 893 - -
Cma13g01017 1359 MobiDBLite consensus disorder prediction 902 920 - -
Cma13g01017 1359 PANTHER DELTA ADAPTIN-RELATED 3 944 IPR017105 GO:0015031|GO:0030123
Cma13g01017 1359 Pfam Adaptin N terminal region 31 625 IPR002553 GO:0006886|GO:0016192|GO:0030117
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01017 K12396 AP3D; AP-3 complex subunit delta - csv:101214944 1610.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01280 Cma-Chr14:10126043 Cma13g01017 Cma-Chr13:7809539 1.17E-106 dispersed
Cma14g00791 Cma-Chr14:4001195 Cma13g01017 Cma-Chr13:7809539 4.13E-128 transposed
Cma15g00923 Cma-Chr15:4845021 Cma13g01017 Cma-Chr13:7809539 2.67E-126 transposed
Cma10g00306 Cma-Chr10:1390730 Cma13g01017 Cma-Chr13:7809539 1.27E-125 wgd
Cma13g01017 Cma-Chr13:7809539 Cma18g00047 Cma-Chr18:191123 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g295 . . . . . . . . Cmo13g01057 . . . . . . . . . . . . . . . Cla06g01454 Cam06g1608 Cec06g1669 Cco06g1664 Clacu06g1573 Cmu06g1525 Cre06g2336 . . . . . Csa01g00673 . . . . . . . . . . Sed12g2090 . . Cma13g01017 . . . . . Bhi08g01243 Tan05g2257 Cmetu02g1431 Lac10g0247 Hepe07g2380 . . Cla04g01081 Cam04g1133 Cec01g1643 Cco01g1692 Clacu04g1161 Cmu04g1142 Cre01g1438 Lsi06g01318 . Chy02g02352 Cme02g01728
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009579 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01017 Cma_Chr13 FPKM 4.976987 4.882325 4.257214 3.931815 3.903772 3.910397 4.660057 5.022549 4.56382 5.03525