Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01019 ATGTGCTCGGAAACAAGCTCGCCGAGAATATCGTTTTCACACAATCTCCCTGGCGATGACAGCCTGCTGATCGATCAGCACGGGCGACGGGACTTAACATTGTTGGATTCAAATCTAGACTTTGAGTTCAATATCAGCATTCAACATGAATCTTCCTCTGCAGATGAGCTGTTTAGCAATGGAGTCATTGTTCCTTTCAAAATTGAATCTCATAAACAATCTCATCCTTTTGAGCCTCCACTCACAGCGTCACTACCTCCTCTTCCTCCCACAGAGAATTCAAAGCAGACATTGGTGGTGAATTCAACTTCATCAGGTCAGTTAGAACAGAGAGGTTCAGAGTCCAAATCCTTTTGGGGATTCAAAAGAAGTAGCAGCCTCAACTTTGAAAGTAAAAGAGCATCTCTTTGTCCACTCCCACTTTTGTCACGCAGCAACTCAACTGGGTCAGTGCCAAATTCAAAGTCCAAAAAGTGTAAACACTCACAAAAGCAAATTTCTCAGAAACAGTACTCGACATCGAACAGAAAGTTGTCGTCAACGTCGCTGCCACTGTCGTCGTTGAATCAATATCCAACAAATCTAAAGCCTCAGGTGTGCAGGAATCCAGGAGGGGCTTATGGCAAGTATCATTGCATTGGCCCTGTGTTGAATGTCCCTCCAAAGTTCTTTGGTTTGGGATCAATTCTTGGATGTGGGAAAGATAGAAAGAGTAAGAAATGA 723 43.57 MCSETSSPRISFSHNLPGDDSLLIDQHGRRDLTLLDSNLDFEFNISIQHESSSADELFSNGVIVPFKIESHKQSHPFEPPLTASLPPLPPTENSKQTLVVNSTSSGQLEQRGSESKSFWGFKRSSSLNFESKRASLCPLPLLSRSNSTGSVPNSKSKKCKHSQKQISQKQYSTSNRKLSSTSLPLSSLNQYPTNLKPQVCRNPGGAYGKYHCIGPVLNVPPKFFGLGSILGCGKDRKSKK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7817245 7817967 - CmaCh13G010190.1 Cma13g01019 306846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01019 240 MobiDBLite consensus disorder prediction 74 95 - -
Cma13g01019 240 MobiDBLite consensus disorder prediction 145 183 - -
Cma13g01019 240 MobiDBLite consensus disorder prediction 165 183 - -
Cma13g01019 240 PANTHER BNAANNG22500D PROTEIN 1 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01019 - - - cmos:111431596 425.631
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02067 Cma-Chr4:13909244 Cma13g01019 Cma-Chr13:7817245 5.96E-33 transposed
Cma04g02995 Cma-Chr4:19603031 Cma13g01019 Cma-Chr13:7817245 4.05E-32 transposed
Cma11g00282 Cma-Chr11:1403798 Cma13g01019 Cma-Chr13:7817245 1.49E-26 wgd
Cma13g01019 Cma-Chr13:7817245 Cma18g00046 Cma-Chr18:189321 6.98E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g301 . . Bda06g00809 . . . . Bma12g01233 Cmo13g01060 . . . . . . Cpe20g00127 . . . . . . . . Cla06g01459 Cam06g1611 Cec06g1673 Cco06g1667 Clacu06g1575 Cmu06g1527 Cre06g2338 . . Cone2ag0431 Cone16ag0569 Lsi02g00187 Csa01g00670 . Cme12g01871 . Blo15g00067 . . Bpe07g01038 . . . Sed08g2187 . . Cma13g01019 . Car13g00853 Car18g00040 Cpe09g01134 . Bhi08g01240 Tan05g2261 Cmetu03g1280 Lac10g0243 Hepe07g2387 . . Cla04g01085 Cam04g1138 Cec01g1648 Cco01g1697 Clacu04g1166 Cmu04g1147 Cre01g1442 Lsi06g01322 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002334 3 2 1 3 3 2 3 2 2 1 2 2 3 2 2 2 2 1 3 2 1 2 2 2 2 2 2 3 3 0 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01019 Cma_Chr13 FPKM 2.112033 2.430475 1.350827 1.066335 2.356844 1.027963 2.178007 2.564485 4.052729 4.333452