Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01021 ATGCTTTCTATGGGCCTTTTGTCTTCTATTTGCGCCTGCTTGAAGAAGCTTAAAGCAGCTAATTCAGCGAGTGCCGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAACTCAGTGCGTTGCAAATTGCGACTAATTTCTTTTCTGAGGTGAATAAGCTCGGCCATGGAGGTTTTGGACCGGTGTACAAGGGGTTGATGCCAAATGGCCAACAAGTAGCAGTCAAGAAGCTATCGGTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTTTACTGCGAATTCAGCACCGAAATTTGGTCATTTTATTGGGCTGCTGTGTAGAAGGGCCTGAAAAGATGCTTGTATATGAGTTTCTGCCAAACAGAAGCCTCGATTATTTTATTTTTGATAAAAAGAGGTCTCCATTCCTGGATTGGACAACACGGTTCCATATAATTACAGGTATCGTTAGAGGACTTCTCTATTTACATGAAGAGGCTCCTGCAAGAATTATACATAGAGATATCAAAGCCAGTAACGTATTATTAGATGAGAAGTTGAATCCGAAAATATCTGATTTTGGATTAGCCCGGCTTTTTCCTGGGGATGATACACATTTGAATACATTTAAGATCGCTGGCACTTATGGATATATGGCTCCTGAATATGCAATTCATGGATACTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGAATCTTGGTATTGGAGATTGTTAGTGGAAGAAAAAATCATGATGATCGGCTTGGTGCTCAACAGGCGGACCTATTGGGATATGCATGGTCGCTTTACCAAGATGGGAAGATTTTAGAATTAGCTGATGAGAGCCTAACAAAATGCAATGCAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGCTATGTTGTCAAGCGAGTGTTTCAGATAGGCCTGATATGAACACCATTCATCTCATGCTTTCCAGTGATTCATTCACGTTGCCGCGCCCCGGGAAACCTGGACTTCATGGTCGAGCAGCACCTCGGACAACTACCTCTACTTATGCATTCACCAAGACAAATACTACTAGTACACAAACTGGCGTCACTAGAGCTTCTGCTGGTAGTAGTTTGGTAGAGGATTATTCAAGAAATTCCATGTCCATTTCTTCAATTGATGAAGGCAGGTGA 1173 41.86 MLSMGLLSSICACLKKLKAANSASADEADDEDVSTDIFFELSALQIATNFFSEVNKLGHGGFGPVYKGLMPNGQQVAVKKLSVDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEFLPNRSLDYFIFDKKRSPFLDWTTRFHIITGIVRGLLYLHEEAPARIIHRDIKASNVLLDEKLNPKISDFGLARLFPGDDTHLNTFKIAGTYGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNHDDRLGAQQADLLGYAWSLYQDGKILELADESLTKCNADEAAMCIQLGLLCCQASVSDRPDMNTIHLMLSSDSFTLPRPGKPGLHGRAAPRTTTSTYAFTKTNTTSTQTGVTRASAGSSLVEDYSRNSMSISSIDEGR 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7828480 7831285 + CmaCh13G010210.1 Cma13g01021 306848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01021 390 SMART serkin_6 51 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01021 390 CDD STKc_IRAK 57 321 - -
Cma13g01021 390 SUPERFAMILY Protein kinase-like (PK-like) 39 337 IPR011009 -
Cma13g01021 390 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 388 - -
Cma13g01021 390 Gene3D Phosphorylase Kinase; domain 1 12 126 - -
Cma13g01021 390 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Cma13g01021 390 Pfam Protein tyrosine and serine/threonine kinase 54 319 IPR001245 GO:0004672|GO:0006468
Cma13g01021 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cma13g01021 390 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01021 390 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 388 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00303 Cma13g01021 CCT
Cma10g00303 Cma13g01021 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01021 Cma-Chr13:7828480 Cma09g00906 Cma-Chr9:4507821 9.31E-117 dispersed
Cma13g01021 Cma-Chr13:7828480 Cma19g00948 Cma-Chr19:8421147 2.37E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69034 PF07714 PK_Tyr_Ser-Thr 3.20E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01021 - - csv:101214463 671.003