Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01023 ATGGCTGAGTTCACTGCAAACTTCCAGAGCTTAAAGCCTTCACCTTTTCCTCTAATGGACATCGATCCCAACCAAATTCCAAGCCTGAATTTTCCTGACAACATTCCTGTTTTGTTCAACGACAGTTTCTTTGGCAATCAAGCTGCTGTTCCTCCCAGATTCCCGGAAATTTGGGGAGAAAATTTCTGTCAAGCAAATCAGATCACTGCACCTGTTTTTGAGCCTACAAATCCATCTGGAAATGACCTCCATGGAAGCAAGAAAAGAAGGCTTCAAAATGAGGCATCTGAAAGTAGCTCTGGCAACTCAACCCCTCAGACTAAAAATAACTCTGGAAAAGGAAAGCGGTTGAAAAAAGGCGACGAAAACGACGATGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACAGACAGTCACAGTATAGCAGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTGCAGAACCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACTCAGATACTGCAGATAGATTGAAGGGAAAGGCAATGAGAGAAGGAAATGGAGGATTATTGGTTGCATCAACTGAAGATGGTCCCTTTGACATGAGCTTTGGTTCTTATTCCACAGCAATATGA 762 41.99 MAEFTANFQSLKPSPFPLMDIDPNQIPSLNFPDNIPVLFNDSFFGNQAAVPPRFPEIWGENFCQANQITAPVFEPTNPSGNDLHGSKKRRLQNEASESSSGNSTPQTKNNSGKGKRLKKGDENDDEKPREVVHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDTADRLKGKAMREGNGGLLVASTEDGPFDMSFGSYSTAI 253
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 7841204 7842988 + CmaCh13G010230.1 Cma13g01023 306850
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01023 253 SMART finulus 146 196 IPR011598 GO:0046983
Cma13g01023 253 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Cma13g01023 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 224 IPR024097 GO:0006355
Cma13g01023 253 PANTHER TRANSCRIPTION FACTOR BEE 1 2 224 - -
Cma13g01023 253 CDD bHLH_AtBPE_like 130 215 - -
Cma13g01023 253 Gene3D - 137 208 IPR036638 GO:0046983
Cma13g01023 253 MobiDBLite consensus disorder prediction 71 149 - -
Cma13g01023 253 MobiDBLite consensus disorder prediction 114 149 - -
Cma13g01023 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 208 IPR036638 GO:0046983
Cma13g01023 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 190 IPR011598 GO:0046983
Cma13g01023 253 MobiDBLite consensus disorder prediction 95 111 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01023 Cma-Chr13:7841204 Cma14g00817 Cma-Chr14:4127961 3.22E-44 dispersed
Cma15g00915 Cma-Chr15:4738386 Cma13g01023 Cma-Chr13:7841204 2.09E-54 transposed
Cma10g00230 Cma-Chr10:1021588 Cma13g01023 Cma-Chr13:7841204 5.10E-70 wgd
Cma11g00279 Cma-Chr11:1389994 Cma13g01023 Cma-Chr13:7841204 1.46E-75 wgd
Cma13g01023 Cma-Chr13:7841204 Cma18g00043 Cma-Chr18:174590 3.06E-88 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36139 PF00010 HLH 2.50E-05 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01023 - - csv:101213736 391.734