Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma13g01023 | ATGGCTGAGTTCACTGCAAACTTCCAGAGCTTAAAGCCTTCACCTTTTCCTCTAATGGACATCGATCCCAACCAAATTCCAAGCCTGAATTTTCCTGACAACATTCCTGTTTTGTTCAACGACAGTTTCTTTGGCAATCAAGCTGCTGTTCCTCCCAGATTCCCGGAAATTTGGGGAGAAAATTTCTGTCAAGCAAATCAGATCACTGCACCTGTTTTTGAGCCTACAAATCCATCTGGAAATGACCTCCATGGAAGCAAGAAAAGAAGGCTTCAAAATGAGGCATCTGAAAGTAGCTCTGGCAACTCAACCCCTCAGACTAAAAATAACTCTGGAAAAGGAAAGCGGTTGAAAAAAGGCGACGAAAACGACGATGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACAGACAGTCACAGTATAGCAGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTGCAGAACCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACTCAGATACTGCAGATAGATTGAAGGGAAAGGCAATGAGAGAAGGAAATGGAGGATTATTGGTTGCATCAACTGAAGATGGTCCCTTTGACATGAGCTTTGGTTCTTATTCCACAGCAATATGA | 762 | 41.99 | MAEFTANFQSLKPSPFPLMDIDPNQIPSLNFPDNIPVLFNDSFFGNQAAVPPRFPEIWGENFCQANQITAPVFEPTNPSGNDLHGSKKRRLQNEASESSSGNSTPQTKNNSGKGKRLKKGDENDDEKPREVVHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDTADRLKGKAMREGNGGLLVASTEDGPFDMSFGSYSTAI | 253 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7841204 | 7842988 | + | CmaCh13G010230.1 | Cma13g01023 | 306850 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma13g01023 | 253 | SMART | finulus | 146 | 196 | IPR011598 | GO:0046983 | |
| Cma13g01023 | 253 | Pfam | Helix-loop-helix DNA-binding domain | 144 | 191 | IPR011598 | GO:0046983 | |
| Cma13g01023 | 253 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 2 | 224 | IPR024097 | GO:0006355 | |
| Cma13g01023 | 253 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 2 | 224 | - | - | |
| Cma13g01023 | 253 | CDD | bHLH_AtBPE_like | 130 | 215 | - | - | |
| Cma13g01023 | 253 | Gene3D | - | 137 | 208 | IPR036638 | GO:0046983 | |
| Cma13g01023 | 253 | MobiDBLite | consensus disorder prediction | 71 | 149 | - | - | |
| Cma13g01023 | 253 | MobiDBLite | consensus disorder prediction | 114 | 149 | - | - | |
| Cma13g01023 | 253 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 138 | 208 | IPR036638 | GO:0046983 | |
| Cma13g01023 | 253 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 140 | 190 | IPR011598 | GO:0046983 | |
| Cma13g01023 | 253 | MobiDBLite | consensus disorder prediction | 95 | 111 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00230 | Cma13g01023 | CCT | |
| Cma11g00279 | Cma13g01023 | CCT | |
| Cma11g00279 | Cma13g01023 | ECH | |
| Cma10g00230 | Cma13g01023 | ECH | |
| Cma13g01023 | Cma18g00043 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma13g01023 | Cma-Chr13:7841204 | Cma14g00817 | Cma-Chr14:4127961 | 3.22E-44 | dispersed | |
| Cma15g00915 | Cma-Chr15:4738386 | Cma13g01023 | Cma-Chr13:7841204 | 2.09E-54 | transposed | |
| Cma10g00230 | Cma-Chr10:1021588 | Cma13g01023 | Cma-Chr13:7841204 | 5.10E-70 | wgd | |
| Cma11g00279 | Cma-Chr11:1389994 | Cma13g01023 | Cma-Chr13:7841204 | 1.46E-75 | wgd | |
| Cma13g01023 | Cma-Chr13:7841204 | Cma18g00043 | Cma-Chr18:174590 | 3.06E-88 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36139 | PF00010 | HLH | 2.50E-05 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma13g01023 | - | - | csv:101213736 | 391.734 |