Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01031 ATGGCCCACGCTGATCCTGATCCTGACTCTGGCCTTGTTCAACATCGGATTCCACAATCGCTTCTCTCATTTGGAACTCCTGTAGCTCCTCGGTGGTTGAAGATGGAGTCCGATAAGATTAAAGGGGTCGTCATAATCACTCTTCCGCCACCGGACAATCCGTCGGTGGGTAAATCCATCACTGCTTTTACACTCACCGACGACTTCTCGGAACCTCCCCGCGAATCCGTTGCCGTTGGTCAAGAAGAACAAGAACCCAACAGCAACCATTTGACTCTCCCACCGGATCTTCCGATTCAGACCCCTTCTAATCAGCGAAGTATTCCTTTGTCGAGGGAGCTTTTTGCTGGTACTCCTAGAAAGCTCGTCGTCTTATTAAGCATTGCCCTCGTTGCTATTTATCTTTATTCTTCCAGTTTTCCGGAGACCCTTCAGGAACTTCGTAGTTCCGAGAAGAATGATGATGATCGCCGTACTTCCTTGTTGTTTCCCCTTTATTTCCAATCGGAGTTGGGTGACAACAGTGATTTCCAGCTTAAGTTGGGCAGGACTAAAGGCCTAAATAAGGATGCTCTGAGTGCAGCTTTCAATGATGAACTTGGAGTTCCGAAGCCTACCAAATTGATTTCTTCCACTTTAAAATCTGATTCTTCAGCCGTTTTTCCTGTTCGTGGAGATATTTATCCAGATGGGTTGTATTATACTTACATCATGGTTGGAGAGCCACCGAGACCTTACTTCCTCGACATTGATACTGGGAGCGACTTGACATGGGTTCAGTGTGACGCTCCTTGCACCAGTTGTGGCAAGGGAAGAAGTCCGTTATACAAGCCAAAAAGAGAGAACGTTGTATCTTTCAAGGACTCTTTGTGCATGGAAGTTCAAAGAAATTATAATGGCGATCAGTGTGCAACCTGCCATCAGTGTGACTACGAGATTCAATATGCTGACCAGAGCTCCTCTCTAGGGGTTCTTGTTAAAGATGAGTTTACCTTAAAGTTCTCCAATGGATCATTGACCAAGTTGAACGCGATTTTCGGGTGTGCATATGATCAGCAAGGCGTGCTATTGAACACTTTGTCGAAGACTGATGGCATTCTAGGACTAAGCAGGGCTAAAGTTAGCTTACCTTCCCAGTTGGCGAGTCAAGGGATCATAAACAATGTGGTAGGTCACTGTCTTACCGGTGATCCAGCAAGTGGTGGATATATGTTTCTAGGTGATGATTTTGTGCCACAGTGGGGGATGGCATGGGTTGCCATGCTTGACAGCCCTTCCATGGATTTTTATCAAACAAAGGTTGTGAGGATAGATTATGGAAGCAGCCCACTGAGTTTTGATACTTGGGGTAGCAACCGTGGACGAGTAGTTTTCGATAGTGGCAGCTCCTACACCTACTTCACAAAAGAAGCATATTCTCAATTGGTTGCATCTCTTGAAGAACTCTCAGCGTTTGGGCTTATTGTTCAAGATTCATCAGATATCATTTGTTGGAGAACTGAATCTTCTATCAGATCTGTTAAAGATGTCAAGAAGTTCTTCAAGCCTTTAACGCTTCAGTTCGAGAGCAGATTTTGGATTGTGTCCACGAAACTTGAGATTCCTCCAGAGAATTATTTAGTCATCAATAAAGAAGGAAATGTATGCTTGGGAATTCTTGATGGAAGCCAGGTACATGATGATGGGTCCACAACCATTCTTGGAGACAACGCATTGCGTGGGAAGTTGGTCGTTTACGACAACGTGAATAACAGGATTGGATGGACTTCATCCGACTGTCACAATCCGAGAAGAATGAAACGCCTCCCGCTCTTTTGA 1818 44.99 MAHADPDPDSGLVQHRIPQSLLSFGTPVAPRWLKMESDKIKGVVIITLPPPDNPSVGKSITAFTLTDDFSEPPRESVAVGQEEQEPNSNHLTLPPDLPIQTPSNQRSIPLSRELFAGTPRKLVVLLSIALVAIYLYSSSFPETLQELRSSEKNDDDRRTSLLFPLYFQSELGDNSDFQLKLGRTKGLNKDALSAAFNDELGVPKPTKLISSTLKSDSSAVFPVRGDIYPDGLYYTYIMVGEPPRPYFLDIDTGSDLTWVQCDAPCTSCGKGRSPLYKPKRENVVSFKDSLCMEVQRNYNGDQCATCHQCDYEIQYADQSSSLGVLVKDEFTLKFSNGSLTKLNAIFGCAYDQQGVLLNTLSKTDGILGLSRAKVSLPSQLASQGIINNVVGHCLTGDPASGGYMFLGDDFVPQWGMAWVAMLDSPSMDFYQTKVVRIDYGSSPLSFDTWGSNRGRVVFDSGSSYTYFTKEAYSQLVASLEELSAFGLIVQDSSDIICWRTESSIRSVKDVKKFFKPLTLQFESRFWIVSTKLEIPPENYLVINKEGNVCLGILDGSQVHDDGSTTILGDNALRGKLVVYDNVNNRIGWTSSDCHNPRRMKRLPLF 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7882834 7887300 - CmaCh13G010310.1 Cma13g01031 306858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01031 605 Pfam Xylanase inhibitor C-terminal 433 589 IPR032799 -
Cma13g01031 605 Pfam Xylanase inhibitor N-terminal 233 408 IPR032861 -
Cma13g01031 605 ProSiteProfiles Peptidase family A1 domain profile. 233 589 IPR033121 -
Cma13g01031 605 PANTHER ASPARTYL PROTEASE APCB1 47 597 - -
Cma13g01031 605 Gene3D Acid Proteases 209 408 IPR021109 -
Cma13g01031 605 Gene3D Acid Proteases 413 599 IPR021109 -
Cma13g01031 605 MobiDBLite consensus disorder prediction 67 98 - -
Cma13g01031 605 PANTHER ASPARTYL PROTEASES 47 597 IPR001461 GO:0004190|GO:0006508
Cma13g01031 605 SUPERFAMILY Acid proteases 227 594 IPR021109 -
Cma13g01031 605 MobiDBLite consensus disorder prediction 81 98 - -
Cma13g01031 605 PRINTS Pepsin (A1) aspartic protease family signature 456 467 IPR001461 GO:0004190|GO:0006508
Cma13g01031 605 PRINTS Pepsin (A1) aspartic protease family signature 565 580 IPR001461 GO:0004190|GO:0006508
Cma13g01031 605 PRINTS Pepsin (A1) aspartic protease family signature 239 259 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01031 - - - csv:101212372 1012.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00782 Cma-Chr9:3780531 Cma13g01031 Cma-Chr13:7882834 1.77E-55 dispersed
Cma13g01031 Cma-Chr13:7882834 Cma02g01366 Cma-Chr2:7970258 1.66E-41 dispersed
Cma13g01031 Cma-Chr13:7882834 Cma04g02372 Cma-Chr4:16432145 7.41E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g339 . . . . . Bpe13g00343 Bma06g00033 . Cmo13g01071 . . . . . . Cpe20g00114 . . . . . . . . . . . . . . . Cone2ag0698 . . . Lsi02g00172 Csa01g00655 Chy12g01445 Cme12g01885 . . . . . . . . Sed01g1713 . . Cma13g01031 . Car13g00865 . . . Bhi08g01222 Tan05g2279 Cmetu12g0397 Lac10g0224 Hepe07g2405 . . Cla04g01102 Cam04g1155 Cec01g1665 Cco01g1711 Clacu04g1182 Cmu04g1162 Cre01g1460 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012585 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01031 Cma_Chr13 FPKM 35.594566 39.25156 13.111983 12.963628 15.446484 13.902063 14.597305 19.842638 20.343628 23.883705