Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01032 ATGGCTCGGATCTTTGAGTATTTTGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGATGGGAACAAGGGATTTCATGGGTTCAGTCACTTGTATCTAGCGTCTCTTCTTGACCAGTATCCTCCTCCCAATCATTCTCTTTATCCTCCTCCACCACCTCAGCTCGCAACGTGTGTTCTACCAGCTGGGGTTGAGTTTTTTTCATCGGGCTTTGATTCCTGTGACGCCTCCACTTTTCCGCGGAGTTATCCGATTGTTTTGACTGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTAGTGAGGATATTGCCGAAGCCTACCGCCTTCCACCAAATTCTTATGCTGATAAATGTATCTGTATTGTTTCTCGTTCACCCAGCTTCCATGTCCTTAAAGATGCGCTGGAGGAATTATTTGCTTTGTGCTTCTCCAGCAGTGGAAGTAGCAAGCCTCTGTGGGACATCATAGCATTCATGATCTCCAATGTACCTCTGCCGACTCCTGGGGAGGAACGGATTTTGTTTGGCATTGAGAATTGTCTTCTTTCCGTTCAGGCTCCACCAAAGGATGGGCTTCCCCATGCCGATATTTCGTTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATTTGATCAAACTTTTCACTGCCGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTTTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCGTATATGATGGGTCTTCATTCCGGCGTTGATACATCCTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACCACTGAGGACATACCCCCTATTCCAGAACCAGAGCTCGGATCTTTGCGTAGCGAGCTGATGAAATTATTATATCCCAATGTTGTCAGCATAGATCAAATGAGGTCTGATTTGCGTAGCTCGTGTGAGCAGTACCCTAGAGGTATCTGCAAGCCTTGGGGAGAAGACCATGACCTTCAGCTTAGGTTGATATTTTTGAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAGTGAGACAGATGCCTTCAATACACAAGCATTCTTGAAGAAGCGTTCACGATCAACTAATCAACCAGAAGATCCTATGATAACTCAGTTCCTGGAGTCCCAAGGGTTCTTAGACTATCTAGAGAGATGCATAGGATCTGATGAAAGTAATAACAACATTCTTGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTTCCGTCCTCATTGGCTGAACCTGAGATCATAACAATTTCTGACCCTGATATGGGATCATCAGGTTCTGGTGCGAAGTACACTTATGATAGATTTCCTTCAAACGTCAGAACTGAGGAGCAGGAAGAAAAGAGACAACAAATACTAGCAGCAGTGCGTGGAGCTTTTGAATATTCTGGAAAGCATAACCCTAATTCACCTTCTATGCTGATGGGCAGGGATCCGAAAGCACCAAGCCTCAGTCCAATGGAGAGGGCTGCCGAAAGAGAGCGCATGGTTTTGGACATAAAAGTCAAACTACAGGGTCTCTGGCTACGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCTTTTGAATATGGCACTATTCTCGCTTTGATCGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGGTTTGTTGAGTGTATTAGAGAGCACATAAATACTGGATGGCTTTGTCAGTTAACCGATGAACAGTTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACCTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATATACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTTTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGTTATTTTGATTATTTGATGGAACAGTCTTCAAATAAATCCGCCAATTATACATCTCTGGTTTCTGCACAGCTAATTATTATGGCATCGCATATGGCTGGACTTGGGCTTCCTGACATCGATGCTTGGTACATGATTGAGACAATTGCGGAGAAAAACAGCATAGGATACAAACAACTTATAAAGCTTCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTGCTGTTAAGTCTCAATCCACATCTGCCCATGCAACGCCATCTCCGCATCCCAAAGATGGATCTGATCAGAATCAGCAACCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGATACATCTGCAAGGATTAACTTGGGTCGTAGTGGCCGTTGGACTTCTGATGTCCCGACCGAGAGTGGTACTTCTCAAAGACAAGATTTACCCTCGGCTGGGCAGAAAAAAGTACAAAGCAATATTCGCATTCTTAGGGGTCATAGTGGAGCTGTGACAGCACTTCATTGTGTTTCAAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGTTTCTTCATTAGTGGAAGCACAGACTGCTTGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAACTGCGAGCAACTTTAAAGGGTCACACGGGACCTGTTCGTGCGATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCACTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCACAGGTCAGTTGTGTGCGTATGCTATCAGGTGAACGTGTCCTTACCGCTGCACATGATGGAACCGTGAAGATGTGGGATGTCAGAACTGATACTTGTGTAGCAACTGTTGGTCGTTGCTCTAGTGCAGTTATATGCATGGAATATGATGACTCTACGGGGATATTGGCTGCTGGTGGTAGAGATACAATAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTCTTGGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACTATTGTTACTGGTAGTGATGATTGGACCGCTAGACTGTGGTCTGTTTCTCGAGGAGCATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTAGAGTATTCTACACTGGATAAAGGAATAATAACTGGTTCAACTGATGGACTTCTTCGTTTTTGGGAAAACGAGGATGGAGGTATTAGATGTGTGAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGAGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCCCTATTTCATCGGCCACAAGAGAGACTCGGTGGCTTCTCTAACACGGGTGCAAAAATGGCTGGGTGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGCGCATCTTCGGACCTCGAAAGGAAACGAATATGCACTGGTGGTCGTAATGGCCTTCTGAGGCTCTGGGAAGCTACAATCAACATCTGA 3633 44.67 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSHLYLASLLDQYPPPNHSLYPPPPPQLATCVLPAGVEFFSSGFDSCDASTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRLPPNSYADKCICIVSRSPSFHVLKDALEELFALCFSSSGSSKPLWDIIAFMISNVPLPTPGEERILFGIENCLLSVQAPPKDGLPHADISFQPLMQCLDLENLIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEDIPPIPEPELGSLRSELMKLLYPNVVSIDQMRSDLRSSCEQYPRGICKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENSETDAFNTQAFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPSSLAEPEIITISDPDMGSSGSGAKYTYDRFPSNVRTEEQEEKRQQILAAVRGAFEYSGKHNPNSPSMLMGRDPKAPSLSPMERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEIYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYTSLVSAQLIIMASHMAGLGLPDIDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSAVKSQSTSAHATPSPHPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARINLGRSGRWTSDVPTESGTSQRQDLPSAGQKKVQSNIRILRGHSGAVTALHCVSKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDHSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVICMEYDDSTGILAAGGRDTIANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGACDAVLACHAGPILAVEYSTLDKGIITGSTDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCASSDLERKRICTGGRNGLLRLWEATINI 1210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7887715 7902159 + CmaCh13G010320.1 Cma13g01032 306859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01032 1210 Gene3D - 1047 1209 IPR015943 GO:0005515
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 950 IPR001680 GO:0005515
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 951 985 - -
Cma13g01032 1210 SMART WD40_4 1027 1064 IPR001680 GO:0005515
Cma13g01032 1210 SMART WD40_4 985 1024 IPR001680 GO:0005515
Cma13g01032 1210 SMART WD40_4 1111 1148 IPR001680 GO:0005515
Cma13g01032 1210 SMART WD40_4 944 982 IPR001680 GO:0005515
Cma13g01032 1210 SMART WD40_4 1166 1205 IPR001680 GO:0005515
Cma13g01032 1210 SMART WD40_4 1067 1106 IPR001680 GO:0005515
Cma13g01032 1210 SMART WD40_4 904 941 IPR001680 GO:0005515
Cma13g01032 1210 SMART WD40_4 848 899 IPR001680 GO:0005515
Cma13g01032 1210 SMART DENN_cls 122 306 IPR001194 -
Cma13g01032 1210 ProSitePatterns Trp-Asp (WD) repeats signature. 969 983 IPR019775 -
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1074 1106 - -
Cma13g01032 1210 MobiDBLite consensus disorder prediction 819 848 - -
Cma13g01032 1210 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1210 - -
Cma13g01032 1210 ProSitePatterns Trp-Asp (WD) repeats signature. 1011 1025 IPR019775 -
Cma13g01032 1210 ProSiteProfiles Tripartite DENN domain profile. 19 442 IPR037516 -
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 951 991 IPR001680 GO:0005515
Cma13g01032 1210 SUPERFAMILY WD40 repeat-like 852 1205 IPR036322 GO:0005515
Cma13g01032 1210 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Cma13g01032 1210 SMART dDENN_cls 366 434 IPR005112 -
Cma13g01032 1210 Gene3D - 836 1046 IPR015943 GO:0005515
Cma13g01032 1210 Pfam WD domain, G-beta repeat 909 941 IPR001680 GO:0005515
Cma13g01032 1210 Pfam WD domain, G-beta repeat 1029 1064 IPR001680 GO:0005515
Cma13g01032 1210 Pfam WD domain, G-beta repeat 850 899 IPR001680 GO:0005515
Cma13g01032 1210 Pfam WD domain, G-beta repeat 946 982 IPR001680 GO:0005515
Cma13g01032 1210 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1210 - -
Cma13g01032 1210 Gene3D - 1 176 - -
Cma13g01032 1210 Pfam uDENN domain 36 103 IPR005113 -
Cma13g01032 1210 Gene3D - 202 387 IPR043153 -
Cma13g01032 1210 MobiDBLite consensus disorder prediction 773 796 - -
Cma13g01032 1210 CDD WD40 851 1147 - -
Cma13g01032 1210 SMART uDENN_cls 1 104 IPR005113 -
Cma13g01032 1210 PRINTS G protein beta WD-40 repeat signature 928 942 IPR020472 -
Cma13g01032 1210 PRINTS G protein beta WD-40 repeat signature 969 983 IPR020472 -
Cma13g01032 1210 PRINTS G protein beta WD-40 repeat signature 1051 1065 IPR020472 -
Cma13g01032 1210 Pfam dDENN domain 397 447 IPR005112 -
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 1074 1106 IPR001680 GO:0005515
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 941 - -
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 1034 1073 IPR001680 GO:0005515
Cma13g01032 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 996 1033 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01032 - - - csv:101212131 2263.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00319 Cma-Chr8:1813183 Cma13g01032 Cma-Chr13:7887715 7.25E-06 dispersed
Cma11g01785 Cma-Chr11:11934357 Cma13g01032 Cma-Chr13:7887715 3.72E-11 dispersed
Cma12g01310 Cma-Chr12:10067155 Cma13g01032 Cma-Chr13:7887715 3.55E-09 dispersed
Cma13g01032 Cma-Chr13:7887715 Cma04g01278 Cma-Chr4:6523205 3.87E-13 dispersed
Cma17g01366 Cma-Chr17:9135220 Cma13g01032 Cma-Chr13:7887715 4.91E-10 dispersed
Cma13g01032 Cma-Chr13:7887715 Cma13g00668 Cma-Chr13:6211146 5.37E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01032 Cma_Chr13 FPKM 11.561972 13.38726 13.867748 13.698845 12.37002 11.621078 12.153812 13.932395 12.101583 13.261648