Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01041 ATGGCCAAGCCTCGCAAGCCCAAGAACACCGACGACTCGAAGCCACCTGACAACTCCGGAGCTGTAGTTCGTCACCAGAAGCTTTGTCTTTCCATCGACATTGACAAGCGTCGCGTTTATGGGTTCACCGAGTTGGAAATCGCGGTTCCTGATATTGGCATAGTTGGGTTGCACGCGGAGAATCTTGGGATTGTGAGTGTTTCAGTGGATGGCGACCCTACTGAATTCGAGTATTATCCGCGGACTCAACATGTGGAAAGTGAGAAGAGTTATAAAGCAGTGTCGTCGCCTAGCTCTGCTGCAGATGCTGCGGGGTCAATTTATTTATCTTCAATCGAGAAAGAACTGGTTCCTAATTTGTTGATAAACTGCTGCAAGGCTTTCAAGAATGGAAGTGAGAAGCAAGACCAGCCATTTCTGGAGAATGGAGTGCAACCAGCAGTCGAAGACAAGCAGAATATAAGGCTGGTTCGTATTGATTACTGGGTAGAGAAATCAGACGTAGGTATTCACTTCAATGATCATATTGCTCACACGGACAACCAAATAAGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGATGGCCTACAACGATGCAAGTATGACCTTGAGTTTACTGTCTCTCAAAATCTTGTGGCTGTCAGTAATGGAATTCTGTTGTACCAGGTCTTGAGCAAGGACAATCCTCCCTGCAAAACTTATGTTTATCGTGTAGACATCCCCGTCAATGCACATTGGATATCACTTGCCGTTGGACCATTTGAAATCCTTGCTGATCACCAAAATGGATTTATATCACACATGTGCTCGCCAGTTAATTCTTTAAAGCTCAAGCATACTGTGGAGTTTTTTCATAGTGCATTCAGCTGCTATAAGGATTACCTCTCCGTGGACTTCCCATTTGGGTCATACAAACAAATCTTCATAGAGCCAGAGATTGCAGTATCATCAGCATGTTTGGGAGTTTCCATGTGTATATTTAGTTCTCATTTTTTGTTTGACGAGAAAATCATTGATCAGACCATAGACACGAGGATTAAACTTTCTTATGCTCTTGCTAGGCAGTGGTTTGGTATTTATATTACGCCTGAAGCCCCAAATGACGAGTGGTTGTTGGATGGTCTTGCTGGTTTTTTGACTGATTTATTCATCAAGAAGAACTTAGGAAATAATGAGGCACGCTACCAGCGATACAAGGCAAATTGTGCTGTTTGTAGAGCAGATGATAGTGGTATAACCACCTTGAGTTCCTCTTCTGCTTGTAAAGATTTGTATGGGACCCAACGCATTGGTATATATGGAAAAATAAGATCATGGAAGTCTGTGGCAATCCTTCAAATGTTGGAGAAGCAGATGGGGCCGGAGTCTTTCCGCAAGATTCTGCAAAATATTGTTTCTCGTGCTAAGGATACAACCTCTACATCACAATCACTTAGCACAAAAGAGTTTCGTCATTTGGCCAATAAGATTGGAAACCTTGAGCGGCCATTTCTTAAAGAGTTCATTCCTCGGTGGGTTGAATCATGTGGTTGTCCACTGCTGAGGATGGGATTTTCCTACAACAAGCGGAAAAATATGGTTGAAATGGCAGTGTCACGGGAATGCACAGTAACACCAGCCACAATTTTAGAGAATCGGGACAGTGATACTGGATGGCCTGGCATGATGAGTATCAGGATTTATGAACTTGATGGCGTGTTTGATCATCCAGTTCTCCCAATGACGGGAGAGCCGTGGCAGCTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGACGCCTCCAGAAAACTAAAAAGGGGTCAAAACCTGATGGTTCTGATGACAATGCTGATATACCTGCGCTCGACGTCCGCTCTAGTGTGGAATCTCCTTTGTTATGGTTGCGAGCAGACCCCGAGATGGAATACCTTGCTGAAATTCAGTTTCATCAGCCTGTTCAGATGTGGATTAATCAATTAGAGAAAGACAAGGATGTCATTGCCCAAGCACAAGCAGTCGCGACATTAGAGATGTTGCCTCAACCATCTTTTTCTGTTGTTAATGCTCTTAATAATTTCCTCAGAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCATTGGCAATGGCCAAAACGGCCTCAGAGGATACTGATTGGGCTGGTTTGCTTAATTTGATTAAATTTTTTAAAAGTCAGAGATTCGATGCAGATACTGGACTCCCCAAGCCAAATGAATTTCGTGATTTTCCCGAGTATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGGGCTACCGACCAAAAAAGCCCTAGAGAAGCTGTTGAGTTTGTTTTGCAACTTTTGAAGTACAACGACAACAACGGGAATCCTTACTCTGATGTTTTCTGGTTGGCTGCACTAGTCCAGTCAGTTGGTGAACTTGAATTTGGGCAACAGAGCATTCTCTTTTTAGCATCGCTACTTAAAAGGATTGATAGACTTTTGCAGTTTGACAGGCTGATGCCTAGCTATAATGGGATCTTGACTATTAGCTGCATCCGAACCTTGACCCAGATTGCACTGAAACTATCTGGACTTCTCTCTCTTGATCGTATCATTGAATTGATAAGACCTTTTCGAAATTTTAATTCCACGTGGCAAGTTCGAATTGAGGCTACCCGAGCACTTCTCGATCTTGAGTACCATTGCAACGGAATTGATGCAGTATTGTTATTGTTTATTAAATATTTAGAAGAAGAGAAATCCTTGCGAGGGCAAGTGAAGCTGGGGGTCCATGTTATGCGTTTATGTCAGATAATGAGAAGATCTGATTCAAATGATTCAGTCAATAATGACACTCTTGTTGCTTTGCTCCTCTTACTTGAAGGCCACATGGCGTTTAACAATGTTTGTCTACGTCACTACTTGTTCTGTATTTTACAAGTCCTTGCAGGAAGGCCCCCAACACTTTATGGAGTTCCCAGAGAGTATAAAACATTGCATATGGGTGACTCAGGAACTTGCAGTGAACAAAAGAGGGTTTTAACTTCTCTCATTCCTGAATTCAATCCACCAGAGCCATCATCAGTCTCTGCAGTAGCGCCTGTGCCATGTATTCCAGCAACCCTGTCATCAGAACCACTTCATATTCCCAAACCGAAGCCTGACAGCTTGGCAATTCCCGAGGTTTCCAAGGAAGGAGCAGCAGTTGTAGAGGTTCCCAAGCAAGCGACGGCAATAGCAGAAGCTCCCAGAGAAGCAGCCTCTGTTTCCAACAGTCATGAGAGGAAGTTGCCGGTTGTTAAGATCAAAGTCAGATCATCTGCGGCTACAAGTAGAGCAGATGCCGATAATCTAACCACTGAAAGATCTCATGCTGCACCTCGTGAAACAGATGTTGGTCCTAGTAGTTCTGTTTCCGTTGATGCCCCTCAAAGAAATATTGCAGAGGCTACAAGTATCAGCAACCATATTCTGGAGGAGGTTAACTCCTGTCATGATCATGGATCTCACATGACAGCCAGCATTGGCAGTGCAAAACCTGCGAGTTATGGTGACGATCTTGGGAAGGAGTTCCAGTGCACTGCTGATTCCAGTAGGGCTTTTGGACATTTTCAGCCAGAAGATCCTTCATCATCGAGCATCATACAAGATAACAACATTGATGCTGATGCACAGAAGTATGCAAGTCTTCAGACACTTTCTTTACCACAGCACGATCATGGCTTATTCTCTTTGCACTCTCGCCATGGAAAAAAGGAGAAGAAGAAAGACAAAGAAAAGAAACGTAAACGAGATAGTCATAAAGAACATCGCAATGATCCTGAATACATCGAGCGCAGACGACTGAAGAAAGAGAAGAAACAAAAAGAAAAAGAGATGGCAAAGCTATTGAATGAGGAGGTGAAGCCACTGCCAATTGCAATACCTCGTATAAAAGAACCACCAACCAAGTCAACACCCGTGCAGCTAGAAACAAACGAACCTAGTGGATCAAGATTAATCGTAGGAGTTAATAGTAAGCCCGAGGCATCAGAAGGTACTGCTTCTGCTGCTCCCAAACTTAGAATTAAATTCAAAAATCGGACGTTGAACAATTCATAA 4083 43.52 MAKPRKPKNTDDSKPPDNSGAVVRHQKLCLSIDIDKRRVYGFTELEIAVPDIGIVGLHAENLGIVSVSVDGDPTEFEYYPRTQHVESEKSYKAVSSPSSAADAAGSIYLSSIEKELVPNLLINCCKAFKNGSEKQDQPFLENGVQPAVEDKQNIRLVRIDYWVEKSDVGIHFNDHIAHTDNQIRRARCWFPCMDDGLQRCKYDLEFTVSQNLVAVSNGILLYQVLSKDNPPCKTYVYRVDIPVNAHWISLAVGPFEILADHQNGFISHMCSPVNSLKLKHTVEFFHSAFSCYKDYLSVDFPFGSYKQIFIEPEIAVSSACLGVSMCIFSSHFLFDEKIIDQTIDTRIKLSYALARQWFGIYITPEAPNDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCAVCRADDSGITTLSSSSACKDLYGTQRIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQNIVSRAKDTTSTSQSLSTKEFRHLANKIGNLERPFLKEFIPRWVESCGCPLLRMGFSYNKRKNMVEMAVSRECTVTPATILENRDSDTGWPGMMSIRIYELDGVFDHPVLPMTGEPWQLLEIQCHSKLAARRLQKTKKGSKPDGSDDNADIPALDVRSSVESPLLWLRADPEMEYLAEIQFHQPVQMWINQLEKDKDVIAQAQAVATLEMLPQPSFSVVNALNNFLRDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKSQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRATDQKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGLLSLDRIIELIRPFRNFNSTWQVRIEATRALLDLEYHCNGIDAVLLLFIKYLEEEKSLRGQVKLGVHVMRLCQIMRRSDSNDSVNNDTLVALLLLLEGHMAFNNVCLRHYLFCILQVLAGRPPTLYGVPREYKTLHMGDSGTCSEQKRVLTSLIPEFNPPEPSSVSAVAPVPCIPATLSSEPLHIPKPKPDSLAIPEVSKEGAAVVEVPKQATAIAEAPREAASVSNSHERKLPVVKIKVRSSAATSRADADNLTTERSHAAPRETDVGPSSSVSVDAPQRNIAEATSISNHILEEVNSCHDHGSHMTASIGSAKPASYGDDLGKEFQCTADSSRAFGHFQPEDPSSSSIIQDNNIDADAQKYASLQTLSLPQHDHGLFSLHSRHGKKEKKKDKEKKRKRDSHKEHRNDPEYIERRRLKKEKKQKEKEMAKLLNEEVKPLPIAIPRIKEPPTKSTPVQLETNEPSGSRLIVGVNSKPEASEGTASAAPKLRIKFKNRTLNNS 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7939023 7956807 - CmaCh13G010410.1 Cma13g01041 306868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01041 1360 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 10 254 IPR042097 -
Cma13g01041 1360 SUPERFAMILY ARM repeat 446 978 IPR016024 -
Cma13g01041 1360 Coils Coil 1273 1296 - -
Cma13g01041 1360 MobiDBLite consensus disorder prediction 1260 1292 - -
Cma13g01041 1360 Gene3D - 638 950 IPR011989 -
Cma13g01041 1360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 271 516 - -
Cma13g01041 1360 MobiDBLite consensus disorder prediction 1097 1137 - -
Cma13g01041 1360 MobiDBLite consensus disorder prediction 1233 1345 - -
Cma13g01041 1360 MobiDBLite consensus disorder prediction 1239 1259 - -
Cma13g01041 1360 Gene3D tricorn interacting facor f3 domain 22 253 IPR042097 -
Cma13g01041 1360 Gene3D Neutral Protease Domain 2 260 511 IPR027268 -
Cma13g01041 1360 MobiDBLite consensus disorder prediction 596 616 - -
Cma13g01041 1360 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 19 1293 IPR037813 GO:0005669
Cma13g01041 1360 MobiDBLite consensus disorder prediction 1 21 - -
Cma13g01041 1360 CDD M1_like_TAF2 25 507 - -
Cma13g01041 1360 Pfam Peptidase family M1 domain 283 481 IPR014782 GO:0008237|GO:0008270
Cma13g01041 1360 MobiDBLite consensus disorder prediction 1312 1327 - -
Cma13g01041 1360 MobiDBLite consensus disorder prediction 599 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01041 K03128 TAF2; transcription initiation factor TFIID subunit 2 - csv:101210662 2452.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01041 Cma_Chr13 FPKM 13.417399 13.608476 13.514368 13.244981 25.010586 22.157757 25.771303 19.01263 19.246183 17.978802