Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01045 ATGTCGCAGGATTCAGAGAAGAGGTTTCATTCCATCATGGACAAGCTCTTTCAGAATGCACCAGCCACTCCAAACTCAAATTCTGCATCTTCCCCGTCCTCCAGTCCATCCGGAGGACAATTGTCGAGAGGAAGAAAACGGCCATATTCTTCATCTGCTCTGGTAGTGGGAGAACTGAGGACAAAAAGTGATGTAATTGAGGCATTGCAGAAGCATTCTGCAGCTTCTGCTGGATCCTCTGATGCTCCGTTATGCAGGCCTTGGGACCGTGGAGATCTTTCTAAAAGACTAACCACATTCAAGTCGATGACATGGTTTGGTAAACCTAAGGTGGTAAATCCTATAAATTGTGCTAGAAGAGGTTGGATCAATGTAGATATGGATACTATTGCCTGTGAATCATGCGGAGCACGTCTCCTTTTCTCTACTCCATCTTCCTGGAATCAGCAACAAGTTGAGAAGGCCGCTTTGGTATTTAGCTTAAAGTTGGATAATGGGCACAAGTTACTCTGTCCCTGGATAGATAATGCCTGTGATGAAGCATTGGCTAATTTTCCTCCTACTCCTCCCCCAACTTTAGTTAATAAATTTAGGGAGCGCTGTTCTATGTTATTACATCTTTCAGCTCTCCCTGTTATTTTGTCTTCATTTGTCAAATGGATGAAGAGTCACCACCTCAAGAAATTTCTTGAAGAATTATCCTTGGAGGAATGTGGTAATGAGTCTCATAAAAAATCTGAAATCGAGTACCTAGGAGATGGACACGACTCAGAAACTGCTGAAGTATATTATCAGGCTCTAAAGCTGATTAGCTTGTTTGGATGGGAACCTCGTTCACTGCCGTATGTAGTTGACTGCAAGACAGGGTCTGACCAATCTCTCAAAAAATCCACCACTTTGGTTTCACATCCTACTGTCAATCTATACACTGCTGCCACCAAAGAAAATGTAGATGGGAATGGAATTGCTGAGATTTCAAGTGAGTTGCAATCTCAGCCCAATTCTGTTGTTTTAGATTGCCGGCTCTGTGGAGCTAGCGTTGGATTATGGGCATTCCAAACAATTCCTAAACCTGTGGAAATCATCAGATTGGTTGGACCCACTGAATTGAACAGTGAGTCAGGCACTCATGATTCAGGCAATAAAAGTGTCATCAATCATGCAGGTATTGTTAATGTTGAAATGTCAAAATTAAGTTCCACAATTGCAGGGGGACCTACCCCTGCACGACAGAGTTTCAAGGCCACCATCACTTTGCCTGTCATTGGCCAAAATTTGAGGGCTAGGTTATTCAGTGATGAAAAAATTAGTGATCGGATGTATACTGACCAAGAAATGGTCCAAGGTGATTCCTTGGATAAAAATATGTTACAAGATAGCAAAAGCAGTGAAGATAGCACCCTTACTGGACAAATTGATCAGCAGAATCAAACACCTGATCCTAGATGCAGTACTTCTGGTGATGATCAGACCCCTTTGTTGGAAGGTATAAGTGTTACTGATCAGGGAACCTTACCTGAATCTTGTTTGAATGGTTCAACTGAGGAAACTCAAGTAAAGAGGACAGAGATTGTTCCTGCTCAGGAAATTGAAGTGGTGGAGAATGCTGAGGATTCAATACAGTCGGATTCTGGTAACAAAGCAGAAGATCTGCATCGTGGCCTTTCTCCAGTCAAAAAGTCTTTGGCGTCAACAGATTCTGTTATGATCACAAGTAGTGAATGCAGTGAAAAGAAGTTGCCTTCTGATGTCTCGGACCAGTGTGATCCACAACAGGTTTCAGGAAATGATACCTCAAATAGCAAAGAGGTTTCTTTGGACTTACAGGTGACCCCAAATAAATCTTCGTGCCCTGAAGTTGATACAAATACAGATATTGCCAGTGAGAGCGAATCAACGAGAGACAAACTTTGTTCTGATAACCACAATACCTCAGAAAACCAGGACCATGAACGAGGTGATGCGAATGACAAAGTGAATACCTCTGTGAACAGCGAGCATATTGGCCATGGTGGAGAGGATTATCCCAAGGGTGTTCCGTCAGGTGGTGTAACGGAGTTTGATCCAATCAGGCAGCATAGGCATTTTTGTCCTTGGATTTCCACAGGAAATGTGGCACCTGGTTGGAAACTAACCCTAACTGCTTTACAGCGTGAAAATAGCTCTTCACCACATTCACCTAAGAACTCTCCATCAGCATCTCTTATTAAGGTCGATGACCCGGTTACATCGGTTCGAAATCTATTCACATCTTCTGCAAAGAAATTGAAAAGCAGTCTAGTTTCCAACGAGAGCACCAAGCGCTAG 2307 42.91 MSQDSEKRFHSIMDKLFQNAPATPNSNSASSPSSSPSGGQLSRGRKRPYSSSALVVGELRTKSDVIEALQKHSAASAGSSDAPLCRPWDRGDLSKRLTTFKSMTWFGKPKVVNPINCARRGWINVDMDTIACESCGARLLFSTPSSWNQQQVEKAALVFSLKLDNGHKLLCPWIDNACDEALANFPPTPPPTLVNKFRERCSMLLHLSALPVILSSFVKWMKSHHLKKFLEELSLEECGNESHKKSEIEYLGDGHDSETAEVYYQALKLISLFGWEPRSLPYVVDCKTGSDQSLKKSTTLVSHPTVNLYTAATKENVDGNGIAEISSELQSQPNSVVLDCRLCGASVGLWAFQTIPKPVEIIRLVGPTELNSESGTHDSGNKSVINHAGIVNVEMSKLSSTIAGGPTPARQSFKATITLPVIGQNLRARLFSDEKISDRMYTDQEMVQGDSLDKNMLQDSKSSEDSTLTGQIDQQNQTPDPRCSTSGDDQTPLLEGISVTDQGTLPESCLNGSTEETQVKRTEIVPAQEIEVVENAEDSIQSDSGNKAEDLHRGLSPVKKSLASTDSVMITSSECSEKKLPSDVSDQCDPQQVSGNDTSNSKEVSLDLQVTPNKSSCPEVDTNTDIASESESTRDKLCSDNHNTSENQDHERGDANDKVNTSVNSEHIGHGGEDYPKGVPSGGVTEFDPIRQHRHFCPWISTGNVAPGWKLTLTALQRENSSSPHSPKNSPSASLIKVDDPVTSVRNLFTSSAKKLKSSLVSNESTKR 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7967963 7973595 - CmaCh13G010450.1 Cma13g01045 306872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01045 768 MobiDBLite consensus disorder prediction 718 738 - -
Cma13g01045 768 MobiDBLite consensus disorder prediction 585 627 - -
Cma13g01045 768 MobiDBLite consensus disorder prediction 560 578 - -
Cma13g01045 768 MobiDBLite consensus disorder prediction 628 657 - -
Cma13g01045 768 Pfam C3HC zinc finger-like 87 211 IPR012935 GO:0008270
Cma13g01045 768 MobiDBLite consensus disorder prediction 718 737 - -
Cma13g01045 768 MobiDBLite consensus disorder prediction 441 679 - -
Cma13g01045 768 MobiDBLite consensus disorder prediction 1 53 - -
Cma13g01045 768 MobiDBLite consensus disorder prediction 18 47 - -
Cma13g01045 768 MobiDBLite consensus disorder prediction 448 521 - -
Cma13g01045 768 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 756 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01045 - - - csv:101206120 1163.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00515 Cma-Chr13:5451093 Cma13g01045 Cma-Chr13:7967963 2.11E-57 dispersed
Cma13g01045 Cma-Chr13:7967963 Cma18g00488 Cma-Chr18:2771837 7.00E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g375 . . . . . Bpe13g00337 Bma06g00005 . Cmo13g01086 . . . . . . Cpe20g00103 . . . . . . . . . . . . . . . . Cone16ag0270 . . Lsi02g00158 Csa01g00643 Chy12g01459 Cme12g01899 . . . . . . . . Sed08g2160 . . Cma13g01045 . Car13g00878 . . . Bhi08g01035 Tan05g2298 Cmetu12g0465 Lac10g0210 Hepe07g2419 . . Cla04g01115 Cam04g1168 Cec01g1679 Cco01g1727 Clacu04g1196 Cmu04g1175 Cre01g1474 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010799 0 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01045 Cma_Chr13 FPKM 6.845789 8.961734 9.441532 10.282466 7.074965 7.587846 8.42033 18.763956 16.511372 18.253521