Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01046 ATGGCTTTCCTCCTCCTCTGTTCTGCTCCCTTCAAAGCTTTCCTCCTCCTCCTCCTCCTCTCCTTCCACTTCTTCTCCGCTGTTAGCACCGAATTCCTCGTCGGCGATGATGATGGATGGGAAGTCCCTGATCCAAAAGAAACTGGCAAATACAACAAATGGGCCTCCCGCAACAGATTCTCTGTTCATGACACTGTCAATTTCAAGTACAAGAAGGATTCGGTGATGGTGGTGACGGAGGAAGAGTACAAAGACTGCCTTTCTTCAAAGCCTCTGTTTTATGACAACAGTGGCAACAGTGTTGTGAAACTTGACAGACCAGGGCTGTTCTATTTCATCAGTGGGGTTACAGGGCATTGTCAAAAAGGCCAGAAAATGATCATCAAAGTGTTGGAACCTGTCAGCCCTCCTCACCCACCCACTCCTCCACCCCATGATAACAAGAAAGCTGCAGCAGCTAATTTACTCTCTGTTTCATCTCCAATCTTGGGGATGTTCTTCATGTTCTTTGCTTCGTTTCTGCTTATTTGA 531 46.89 MAFLLLCSAPFKAFLLLLLLSFHFFSAVSTEFLVGDDDGWEVPDPKETGKYNKWASRNRFSVHDTVNFKYKKDSVMVVTEEEYKDCLSSKPLFYDNSGNSVVKLDRPGLFYFISGVTGHCQKGQKMIIKVLEPVSPPHPPTPPPHDNKKAAAANLLSVSSPILGMFFMFFASFLLI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7973924 7974685 + CmaCh13G010460.1 Cma13g01046 306873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01046 176 ProSiteProfiles Phytocyanin domain profile. 30 132 IPR003245 GO:0009055
Cma13g01046 176 PANTHER EARLY NODULIN-LIKE PROTEIN 6 14 160 - -
Cma13g01046 176 SUPERFAMILY Cupredoxins 29 131 IPR008972 -
Cma13g01046 176 Gene3D - 28 135 IPR008972 -
Cma13g01046 176 Pfam Plastocyanin-like domain 47 124 IPR003245 GO:0009055
Cma13g01046 176 PANTHER BLUE COPPER PROTEIN 14 160 IPR039391 GO:0009055
Cma13g01046 176 CDD OsENODL1_like 30 131 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01046 - - - csv:101205884 236.113
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01046 Cma18g00027 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01046 Cma-Chr13:7973924 Cma17g00783 Cma-Chr17:6248468 1.20E-34 dispersed
Cma01g01072 Cma-Chr1:7915638 Cma13g01046 Cma-Chr13:7973924 7.17E-27 transposed
Cma04g02660 Cma-Chr4:18083173 Cma13g01046 Cma-Chr13:7973924 7.00E-33 transposed
Cma13g01046 Cma-Chr13:7973924 Cma18g00027 Cma-Chr18:104630 2.79E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g376 . . . . . . . . Cmo13g01087 . . . . . . Cpe20g00102 . . . . . . . . . . . . . . . . . . . Lsi02g00157 Csa01g00642 Chy12g01460 Cme12g01900 . . . Bda14g00907 . Bpe15g00551 Bma03g00881 . Sed08g2159 . . Cma13g01046 Cma18g00027 Car13g00879 . . . Bhi08g01036 Tan05g2299 Cmetu12g1793 Lac10g0209 Hepe07g2420 . . Cla04g01116 Cam04g1169 Cec01g1680 Cco01g1728 Clacu04g1197 Cmu04g1176 Cre01g1475 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma02g00095 . 24 145 Phytocyanin Superfamily AT4G28365 54.9 5.4e-37 151.8
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma12g00366 CCT 9 165 Phytocyanin Superfamily AT5G25090 57.1 1.1e-39 160.6
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma20g00126 . 52 259 Phytocyanin Superfamily AT1G08500 52.4 1.7e-50 196.8
Cma10g00972 . 32 172 Phytocyanin Superfamily AT2G27035 53.9 2.3e-41 166.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01046 Cma_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.181731 0.0