Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01046 ATGGCTTTCCTCCTCCTCTGTTCTGCTCCCTTCAAAGCTTTCCTCCTCCTCCTCCTCCTCTCCTTCCACTTCTTCTCCGCTGTTAGCACCGAATTCCTCGTCGGCGATGATGATGGATGGGAAGTCCCTGATCCAAAAGAAACTGGCAAATACAACAAATGGGCCTCCCGCAACAGATTCTCTGTTCATGACACTGTCAATTTCAAGTACAAGAAGGATTCGGTGATGGTGGTGACGGAGGAAGAGTACAAAGACTGCCTTTCTTCAAAGCCTCTGTTTTATGACAACAGTGGCAACAGTGTTGTGAAACTTGACAGACCAGGGCTGTTCTATTTCATCAGTGGGGTTACAGGGCATTGTCAAAAAGGCCAGAAAATGATCATCAAAGTGTTGGAACCTGTCAGCCCTCCTCACCCACCCACTCCTCCACCCCATGATAACAAGAAAGCTGCAGCAGCTAATTTACTCTCTGTTTCATCTCCAATCTTGGGGATGTTCTTCATGTTCTTTGCTTCGTTTCTGCTTATTTGA 531 46.89 MAFLLLCSAPFKAFLLLLLLSFHFFSAVSTEFLVGDDDGWEVPDPKETGKYNKWASRNRFSVHDTVNFKYKKDSVMVVTEEEYKDCLSSKPLFYDNSGNSVVKLDRPGLFYFISGVTGHCQKGQKMIIKVLEPVSPPHPPTPPPHDNKKAAAANLLSVSSPILGMFFMFFASFLLI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7973924 7974685 + CmaCh13G010460.1 Cma13g01046 306873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01046 176 ProSiteProfiles Phytocyanin domain profile. 30 132 IPR003245 GO:0009055
Cma13g01046 176 PANTHER EARLY NODULIN-LIKE PROTEIN 6 14 160 - -
Cma13g01046 176 SUPERFAMILY Cupredoxins 29 131 IPR008972 -
Cma13g01046 176 Gene3D - 28 135 IPR008972 -
Cma13g01046 176 Pfam Plastocyanin-like domain 47 124 IPR003245 GO:0009055
Cma13g01046 176 PANTHER BLUE COPPER PROTEIN 14 160 IPR039391 GO:0009055
Cma13g01046 176 CDD OsENODL1_like 30 131 IPR041846 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g01046 Cma18g00027 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01046 Cma-Chr13:7973924 Cma17g00783 Cma-Chr17:6248468 1.20E-34 dispersed
Cma01g01072 Cma-Chr1:7915638 Cma13g01046 Cma-Chr13:7973924 7.17E-27 transposed
Cma04g02660 Cma-Chr4:18083173 Cma13g01046 Cma-Chr13:7973924 7.00E-33 transposed
Cma13g01046 Cma-Chr13:7973924 Cma18g00027 Cma-Chr18:104630 2.79E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01046 - - csv:101205884 236.113