Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01047 ATGGTTGCACTGGACGAGAAAGTTCCCTCTTCATCAGAGGTTGAGGCAATGGACAAAAGGCGCAAGAGGAAGAGACCAAAGAAAAATCTTCCTTCAACGGGTGCTGAAGAATCGGAACCTCAAAATCCAATGAAAGCTGAAGAAGAAGGGGAAGGAGATGCTGAAGGTAATGTATCAGAGGAGAAAGTGAAAAAAGGTGAGAAGATGAACAAGAAGAAGAGGAAGACGAAAAAGAAGGGCGAGTTGGAGGAGGAAGGACATGAAACTGCTAATGATGGTGAGGGAGAGGATGACGTGGATGGGAAAGTTGAGAAGGATGAGGAGAAAGTGAACGAGAAAAAGAAGGTTAAGACTGGTGGCTCAGGAATTATGAGTACAGTTTCGTTTGATTCGCTTGAATTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATTGGATTTCAGCATATGACTCAGATTCAAGCCAGATCAATTCCACCTTTTCTGACTGGCAAAGATGTTCTTGGAGCCGCAAGGACTGGATCCGGGAAAACCCTTGCCTTTCTTATACCAGCTGTTGAACTACTCCATCACATCAGCTTTACTCCTCGTAATGGAACTGGTGTTATCGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGATGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCAGATCGTATTACAAAAGGGGTCAATCTGTTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAACATACCAAGAATTTTGTGTTTAAAAATTTGAAGTGCCTCATAATTGATGAAGCGGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAGATTATAAAGCTCCTACCAAAGAATAGACAGACTGCTTTATTCTCAGCAACCCAAACTCAAAAGGTTGAAGATCTTGTTCGCCTGTCTTTTCAGTCGACTCCTATTTATATTGATGTAGATGATGGAAGAACCAAGGTCACCAATGAGGGGTTGCAACAAGGTTATTGTGTTGTGCCCAGTGCTAAAAGATTCGTTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAATTATGGTCTTCTTCTCGTCTTGTAACTCCGTCAAATTCCATGCGGACCTTCTTAGATACATTAAGGTCGATTGCATGGATATTCATGGAAAACAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTGCCTTCAACAAGGCTGAGACGGGGATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGACATCCCCGCTGTTGATTGGATTGTGCAATATGATCCTCCAGATGAACCCAAGGAATATATTCACAGAGTTGGTCGAACAGCTCGAGGCGAGGGTAACAAAGGAAATGCCCTACTTTTCTTGATTTCTGAAGAGCTTCAATTTCTTCGCTATTTAAAGGATGCGAAAGTTCCTGTCAAAGAGTATGAGTTCAGTGATAAGAAATTAGCCAACGTGCAGTCTCATCTGGAAAAGCTGGTTGGGAGCAATTATTATTTGAACAAGTCCGCTAAGGAAGCTTACAGATCCTATTTATTAGCTTACAATTCACACTCTATAAAAGATATTTTCAACGTCCACCGCCTTGATCTCCAGGCTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTCAACCTTAACATCGACAGCGGTGCCTCGAAATTCAGGAAGAAAACGCGCAACGTAGAAGGGAGCAAAAACCGATTCAGTGAGAGCAACCCTTATGGGAGGAAGAATGGCGATGAGGATGAGAGACAATTTGTAAGATACTAA 1848 42.59 MVALDEKVPSSSEVEAMDKRRKRKRPKKNLPSTGAEESEPQNPMKAEEEGEGDAEGNVSEEKVKKGEKMNKKKRKTKKKGELEEEGHETANDGEGEDDVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQIQARSIPPFLTGKDVLGAARTGSGKTLAFLIPAVELLHHISFTPRNGTGVIVICPTRELAMQTHDVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRNLSKKIMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFAFNKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGNKGNALLFLISEELQFLRYLKDAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKEAYRSYLLAYNSHSIKDIFNVHRLDLQAIAASFCFSNPPKVNLNIDSGASKFRKKTRNVEGSKNRFSESNPYGRKNGDEDERQFVRY 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7975283 7980409 - CmaCh13G010470.1 Cma13g01047 306874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01047 615 SMART ultradead3 146 351 IPR014001 -
Cma13g01047 615 SMART DUF4217_3 508 571 IPR025313 -
Cma13g01047 615 Gene3D - 344 585 IPR027417 -
Cma13g01047 615 Gene3D - 102 339 IPR027417 -
Cma13g01047 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 334 IPR027417 -
Cma13g01047 615 SMART helicmild6 387 468 IPR001650 -
Cma13g01047 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 481 IPR027417 -
Cma13g01047 615 Pfam Helicase conserved C-terminal domain 363 467 IPR001650 -
Cma13g01047 615 CDD DEADc_DDX18 138 335 IPR044773 GO:0003724|GO:0005524
Cma13g01047 615 PANTHER RNA HELICASE 94 604 - -
Cma13g01047 615 Pfam DEAD/DEAH box helicase 151 322 IPR011545 GO:0003676|GO:0005524
Cma13g01047 615 MobiDBLite consensus disorder prediction 1 117 - -
Cma13g01047 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 333 IPR014001 -
Cma13g01047 615 MobiDBLite consensus disorder prediction 41 67 - -
Cma13g01047 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Cma13g01047 615 MobiDBLite consensus disorder prediction 600 615 - -
Cma13g01047 615 MobiDBLite consensus disorder prediction 96 116 - -
Cma13g01047 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 517 IPR001650 -
Cma13g01047 615 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Cma13g01047 615 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 94 604 - -
Cma13g01047 615 CDD SF2_C_DEAD 348 478 - -
Cma13g01047 615 Pfam Domain of unknown function (DUF4217) 509 569 IPR025313 -
Cma13g01047 615 MobiDBLite consensus disorder prediction 582 615 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01047 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101222933 990.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00132 Cma-Chr4:618852 Cma13g01047 Cma-Chr13:7975283 6.49E-90 dispersed
Cma11g00226 Cma-Chr11:1132314 Cma13g01047 Cma-Chr13:7975283 1.74E-07 dispersed
Cma13g00979 Cma-Chr13:7613551 Cma13g01047 Cma-Chr13:7975283 0 dispersed
Cma13g01047 Cma-Chr13:7975283 Cma02g01094 Cma-Chr2:6510262 1.81E-66 dispersed
Cma13g01047 Cma-Chr13:7975283 Cma15g01046 Cma-Chr15:6551181 1.25E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01047 Cma_Chr13 FPKM 10.637506 10.257913 10.104547 10.180387 17.744644 17.841976 17.914989 10.685629 11.410157 10.387544