Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01049 ATGGGCGGTGGTAGAAGACGAAGGAAGCAGCATTTCAGAAGGATTCATGCCTTTCCTTGTGGTAGAGCATCATTCAAAGATGAACAGTCATTAATTGGAGGGCCAGGGTTCTCAAGGGTAGTTTACTGTAACGATCCAGATGGTTTTGAGGCGAGTCTTCTCAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTATTGCTTCATTCTTCCCCAGATCCTTGTTTGAGCAATTCAGAAGGGTTGCCAATTTGTATTTCCTCCTTTGTGCTCTGCTTGCCTTTAGCCCTCTCTCGCCTTATTCGCCCATCAGTAATGTTCTTCCTCTTCTTCTTGTTATTGGTGTCACCATGGGCAAAGAGGGTGTTGAAGATTGGAGGCGAACCAAACAGGACATGGAGATGAATAACAGGATAGTGAAAGTACATATTCAAGAGGGTGAGTTTGTTGAGACTAAATGGATGGACTTGAAAGTTGGGGACGTGGTTAAGGTGGAGAAGGATGAATTCTTCCCTGCTGATCTCATTTTACTGTCGTCGAGTTACGAGGAAGCGATTTGCTATGTCGAGACGATGAATCTTGATGGTGAAACGAATTTGAAGCTAAAGAATGCATTAGAAGCAAGCTCAAACTTCCACGAGGATTCGAGCTTCAGAAATTTCAAGGCTATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTGGGAAGTATGGAGCTTGAAGAACAGCAACACCCTCTCAGCCCTCAACAGCTTCTTCTTCGTGACTCGAAGCTTCGAAACACGGATTTTATATATGGGGTCGTGATCTTCACGGGTCATGATACAAAGGTTATTCAGAACTCAACAGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAGGATTGTGTTCTTCCTGTTTGCTGTTTTGGTTTTGATATCAATTTCTGGGTCGATTTTTTTCGGAGTTTCGACTAGGGACGATATAGAAAATGGAAGAACTACGAGATGGTACCTTAGGCCAGACGATACCACAATATATTACAATCCCAAAAACGCTCCAGCTGCGGCAATATTGCAGTTTTTGACAGCTCTGATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCCATTGAAATTGTCAAAGTTCTGCAGAGCGTCTTCATCAACCAAGATCTTCACATGTACCATGAGGAAACTGATAAGCCAGCTCGTGCTCGTACCTCGAATTTGAATGAAGAGCTTGGCCAAGTTGACACCATTCTTTCTGATAAAACCGGGACATTGACCTGCAATTCAATGGAGTTCATCAAGTGTTCGGTGGGCGGGACTGCTTACGGACGAGGAATTACAGAAATAGAGAGAGCTCTTGCAAGACGAAAGGAATCAACTTTACCTGAAAATTTAGAGGCCAACATTGCACGTCTTAGCAGCGAAAAACCGTTCATTAAGGGGTTCAATTTCAAGGACGAAAGAATAATGGATGGTAATTGGGTGAACGAGCCTCAAGCCGATGTAATCCAGAAGTTCCTGCAGCTTCTTGCTATCTGTCATACTGCATTGCCAGAAATTGATGAGGAAACTGGAAACATTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTTGGATTCGAGTTCTATGAACGGACTCAGACAAGCATTTCGTTGCGGGAGTTCGATCCAACCTCGGCCCGAAAAGTCGAAAGATCATATCAACTCCTGGATGTTTTGGAATTTAATAGCACAAGAAAACGGATGTCTGTGATTATAAGAGATGCACAGGGACAGCTACTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAATGGAAGTGAGTTTGAAGAACAGACAAAGGTGCACATCAATGAGTACGCCGATGCCGGTTTAAGAACTTTGGTTCTAGCGTACCGTGAGCTGAAAGAGGAGGAGTTTAATAAATTTCATCAAGAATTCATAAAAGCCAAGAACACAGTGAGCACGGATCGTGACGACACCATCGATCAGTTAACAGAAAACATCGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGTATTGACAAGCTTGCTCAGGCTGGTATAAAAATATGGGTGCTGACTGGTGATAAAATGGAAACAGCCATCAACATTGGCTTTGCTTGTAGCTTACTTAGGCAAGGAATGAGGCAAATCACTATCAGCTCAGAGACAGTGGAAGGAAAAGCTCTAGACCAAGTTGAAGAGGTTCACAAATCTGCAGCTATCAAGGTGTTTAAGGAAAGCGTGACTCGACAAATAACCGACGCAAAAGCATTGCTTGCATCTTCAAGCAAAACCCCGGAAGCGTTGGCTTTGATAATTGATGGAAAGTCGCTCACCTACGCTCTGGAGGACGATGTGAAGAACTTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTTATCTGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTCAAAACAGGTAGCACCATTCTAGCAGTCGGTGATGGTGCAAACGACGTCGGGATGCTTCAAGAAGCGGATATCGGGATTGGTATTAGCGGTGTAGAAGGGATGCAGGCAGTCATGTCGAGCGACATTGCCATAGCACAGTTTCGATATTTGGAACGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGGAGAATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTATGCATCGTTCTCTGGCCAATCTGTATTCGATGACTGGTTCCTTTCGCTGTATAACGTCTTCTTTACGTCTCTCCCTGTGATCGCATTGGGAGTATTCGACCAGGACGTCTCATCCCGGCACTGTCTCAAGTTCCCACTTTTATACCAAGAAGGTGTCCAAAACGTGTTGTTTAGTTGGGTTCGAATTATCGGTTGGGCGTTCAACGGGCTACTAAGTTCTATCATCATCTTCTTCTTTTGTGTCGGGGCAATCGAATATCAAGCTTTCCGCAGCAGTGGAGAGGTCGTCGGGTTGGAAATTCTGGGCGTCACCATGTACACTTGTGTCGTTTGGGTTGTAAACTGTCAAATGGCATTATCAATCAGTTACTTCACATATATTCAACATCTCTTCATCTGGGGCAGCATCGTTCTCTGGTACTTATTCCTTATGGCATATGGAGCTATAAACGCAACCATATCAACCACTGCATTTCAGGTCTTCGTCGAGGCATGCGCCCCGGCGCCATCGTTTTGGATCCTCACACTATTAGCTCTGGGAGCTTCCCTTCTTCCATACTTCATCTACGCATCCATTCAAATGCGATTCTTCCCAATGAATCATCAAATGATTCAATGGATAAAAGCCGATGGGCACGTGAACGACCCAGAATACTGTCAAGTAGTGAGACAACGGTCGTTACGACATACAACCGTCGGTTACACAGCTCGGTTCAAAGCATCAAAGCATCTTAGAGAAATCCCAGAAAGCAACAACCATTAG 3591 43.61 MGGGRRRRKQHFRRIHAFPCGRASFKDEQSLIGGPGFSRVVYCNDPDGFEASLLNYGGNYVKTSKYTIASFFPRSLFEQFRRVANLYFLLCALLAFSPLSPYSPISNVLPLLLVIGVTMGKEGVEDWRRTKQDMEMNNRIVKVHIQEGEFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNFHEDSSFRNFKAIIKCEDPNANLYSFVGSMELEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTAPPSKRSKIEKRMDRIVFFLFAVLVLISISGSIFFGVSTRDDIENGRTTRWYLRPDDTTIYYNPKNAPAAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSVFINQDLHMYHEETDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEIERALARRKESTLPENLEANIARLSSEKPFIKGFNFKDERIMDGNWVNEPQADVIQKFLQLLAICHTALPEIDEETGNISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSARKVERSYQLLDVLEFNSTRKRMSVIIRDAQGQLLLLCKGADSVMFERLAKNGSEFEEQTKVHINEYADAGLRTLVLAYRELKEEEFNKFHQEFIKAKNTVSTDRDDTIDQLTENIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMRQITISSETVEGKALDQVEEVHKSAAIKVFKESVTRQITDAKALLASSSKTPEALALIIDGKSLTYALEDDVKNLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGSTILAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELYASFSGQSVFDDWFLSLYNVFFTSLPVIALGVFDQDVSSRHCLKFPLLYQEGVQNVLFSWVRIIGWAFNGLLSSIIIFFFCVGAIEYQAFRSSGEVVGLEILGVTMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIVLWYLFLMAYGAINATISTTAFQVFVEACAPAPSFWILTLLALGASLLPYFIYASIQMRFFPMNHQMIQWIKADGHVNDPEYCQVVRQRSLRHTTVGYTARFKASKHLREIPESNNH 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7987560 7993260 + CmaCh13G010490.1 Cma13g01049 306876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01049 1196 SUPERFAMILY Calcium ATPase, transduction domain A 144 284 IPR008250 -
Cma13g01049 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 1187 - -
Cma13g01049 1196 SFLD Haloacid Dehalogenase 409 914 - -
Cma13g01049 1196 Pfam E1-E2 ATPase 136 360 - -
Cma13g01049 1196 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma13g01049 1196 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Cma13g01049 1196 SFLD p-type atpase 409 914 IPR044492 -
Cma13g01049 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Cma13g01049 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Cma13g01049 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 1141 IPR023298 -
Cma13g01049 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 699 IPR023299 GO:0000166
Cma13g01049 1196 Pfam Cation transport ATPase (P-type) 535 623 - -
Cma13g01049 1196 Gene3D - 542 697 IPR023299 GO:0000166
Cma13g01049 1196 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 1187 - -
Cma13g01049 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 829 945 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma13g01049 1196 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Cma13g01049 1196 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Cma13g01049 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Cma13g01049 1196 Gene3D - 698 903 IPR023214 -
Cma13g01049 1196 SUPERFAMILY HAD-like 420 918 IPR036412 -
Cma13g01049 1196 Gene3D - 118 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00317 Cma-Chr4:1554381 Cma13g01049 Cma-Chr13:7987560 0 dispersed
Cma04g01611 Cma-Chr4:8128274 Cma13g01049 Cma-Chr13:7987560 0 dispersed
Cma13g01049 Cma-Chr13:7987560 Cma15g01422 Cma-Chr15:8999195 0 dispersed
Cma18g00030 Cma-Chr18:123057 Cma13g01049 Cma-Chr13:7987560 0 transposed
Cma13g01049 Cma-Chr13:7987560 Cma18g01061 Cma-Chr18:8794419 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01049 K01530 K14802 csv:101209427 2162.5