Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01050 ATGGCGATGAAGATGGCCGTCAGAGCTTCCGCCGTTACCCCACATCATTCACTTCCTTCACTGCCTTCGTCCTCTCATAGATCCGATTCCAAATCTCAATTCCGTCCCATCTCCGTTGGCTTACCGGCGTCCACTACCCTCTCGATGTTAGCCCTAATTTCCTCTCCCTATGAAGCTAGGGCGCTCAATAAGGACCTAATCGTTTCATCTCTCAATGATGTGGAGAAGACGATTGATCAGGTTCAAGAAGCGGGTTCGAATTTCTTTGATATTGCACAACAGGTCATTGACTCTGCTAGAACTATTTTGAAGCCGGGTGTTGATGCGGCGCTGCCGATTGTAAAGCAGGCTGGAGAAGAGGCGCTGAAGGTTGCTTCTCCAACAATTTCTGAGGCTTCAAAGAAAGCCCTCGAAGCACTTCAGGGCTCTGGCATTGACACCCAGCCTGTTCTAACTGCTGCTAAGACAGTAGTAGGTGCAGCGGAACAAACTGGGAAGGTCATTGAAGGTGCCAAGCCTATAGCCTCATCGACTGTCGAGACAATCTCCACGGCAGACCCTCTTGTAATTGCAGAAATTGCTGGAGCCTTGGCCGTGGCATACCTGCTCTTTCCTCCAATTTGGTCTGCCATATCTTTCAGCTTTCGTGGCTACAAAGGTGAGCTCTCTCCTGCTCAAACACTTGAGCTAATTTCGTCGAGCAATTACGTTCTGATCGATATACGATCCGAGAAAGACAAGGATAAGTCTGGCATTCCTCGCCTTCCATCCAGTGCTAAGAACCAGTTGATTGCCATTCCTTTGGAAGAATTACCAAGCAAGTTGCGGGGCATTGTCCGAAATGTAAAGAAGCTAGAAGCTGAACTTTCAGCCATCAAGATATCATATCTCAAGAAACTTAACAAAGGCTCCAATATAGTGATCTTGGGCTCGTACTCGGACTCGGGAAAAGCAGTTGCAAAAGCACTGACAAGGCTTGGCTTCAAGAACTCCTGGATTGTAACAGATGGGTTTTTAGGTAGCAAAGGTTGGTTACAGAGTCGGTTAGGGACAGATACATATAAGTTCTCATTTGCAGAGATCCTTTCGCCGTCCCGAGTCATCCCCGCCGCAACCAAACGTTTCGGGACGACCTCACTGACAGCATCTGGTCAAAAATTGCTTCCTGGTGCTGATTAA 1179 48.01 MAMKMAVRASAVTPHHSLPSLPSSSHRSDSKSQFRPISVGLPASTTLSMLALISSPYEARALNKDLIVSSLNDVEKTIDQVQEAGSNFFDIAQQVIDSARTILKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALQGSGIDTQPVLTAAKTVVGAAEQTGKVIEGAKPIASSTVETISTADPLVIAEIAGALAVAYLLFPPIWSAISFSFRGYKGELSPAQTLELISSSNYVLIDIRSEKDKDKSGIPRLPSSAKNQLIAIPLEELPSKLRGIVRNVKKLEAELSAIKISYLKKLNKGSNIVILGSYSDSGKAVAKALTRLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVIPAATKRFGTTSLTASGQKLLPGAD 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7993274 7996618 + CmaCh13G010500.1 Cma13g01050 306877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01050 392 CDD RHOD 226 340 - -
Cma13g01050 392 Gene3D - 219 358 IPR036873 -
Cma13g01050 392 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 199 344 IPR036873 -
Cma13g01050 392 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 5 390 - -
Cma13g01050 392 MobiDBLite consensus disorder prediction 8 36 - -
Cma13g01050 392 ProSiteProfiles Rhodanese domain profile. 232 353 IPR001763 -
Cma13g01050 392 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 5 390 IPR044690 GO:0009704|GO:0071277|GO:0090333
Cma13g01050 392 SMART rhod_4 222 350 IPR001763 -
Cma13g01050 392 MobiDBLite consensus disorder prediction 16 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01050 - - - csv:101209180 640.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00084 Cma-Chr12:323861 Cma13g01050 Cma-Chr13:7993274 1.68E-16 dispersed
Cma13g01050 Cma-Chr13:7993274 Cma18g00031 Cma-Chr18:129267 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g00511 . 59 371 Sulfurtransferasese/Rhodanese AT1G79230 71.6 1.9e-137 486.1
Cma16g00370 . 59 341 Sulfurtransferasese/Rhodanese AT1G79230 61.3 1.8e-111 399.8
Cma04g00511 . 59 316 Sulfurtransferasese/Rhodanese AT1G16460 69.4 8.9e-104 374.0
Cma16g00370 . 59 288 Sulfurtransferasese/Rhodanese AT1G16460 57.7 8.4e-78 287.7
Cma13g01050 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 61.6 2.6e-86 316.2
Cma18g00031 . 39 315 Sulfurtransferasese/Rhodanese AT5G23060 57.3 1.5e-73 273.9
Cma14g02099 . 1 374 Sulfurtransferasese/Rhodanese AT4G01050 59.3 1.7e-111 400.6
Cma11g01228 . 36 639 Sulfurtransferasese/Rhodanese AT1G09280 63.7 1.2e-222 770.0
Cma04g01058 . 90 449 Sulfurtransferasese/Rhodanese AT2G40760 74.1 1.0e-155 547.4
Cma11g01009 . 82 428 Sulfurtransferasese/Rhodanese AT1G17850 66.0 3.5e-145 512.3
Cma03g00100 . 61 259 Sulfurtransferasese/Rhodanese AT2G42220 75.4 2.4e-84 309.3
Cma14g00066 . 4 215 Sulfurtransferasese/Rhodanese AT3G08920 58.0 9.2e-67 250.8
Cma10g00088 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 66.4 9.7e-112 400.6
Cma02g01280 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 64.3 9.7e-83 304.3
Cma16g00905 . 118 468 Sulfurtransferasese/Rhodanese AT5G55130 71.8 4.0e-147 518.5
Cma16g00031 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 1.1e-78 290.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01050 Cma_Chr13 FPKM 4.169928 4.798931 10.280324 11.184485 53.24947 59.104378 54.203682 11.917465 11.846771 11.304131