Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01051 ATGGGTTGCTCCTTTTCTGGGTTGAATGCTCTGTACGACGCTGTTAACGGCGGCGGAGACATTTGGATCAACGAAAATCGGTTTAGGATCGTGAGGCAGCTCGGTGAAGGCGGGTTCGCCTTTGTATTTTTGGTCAAAGAGATTATTTCCGACTCGTCTTCTGCCTCCGGCGGCGGTCTTGCCAAGAAATTGAAGGACCCATCTCGTCTTTCTGGTGATGGCACTTATGCTTTGAAAAAGGTACTAATTCAGAGCAGTGAGCAATTGGAGCTGGTGAGGGAGGAGATACGTGTTTCGTCGCGTTTTAGTCATCCCAATCTGCTTCCACTTCTTGACCATGCTATAATTTCTGTTAAGTCATCTACTGAAGGATCTGTGAAACATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTACTGGACAATTCCCAGGCCATGAAGGCTAAGAAGGAATTCTTTTCTACATTGGATGTTCTGGAGATATTTTGCCAGCTTTGCGCAGGGCTTAAGCATATGCACAGTGGTGAATCTCCTTATGCACACAATGATGTGAAACCTGGTAATGTCCTTGTAACTCATAGAAAAGGGAAATCACCTCTTGCAATATTGATGGATTTTGGTAGTGCTCGACCTGCTAGGAGAGAAATTCGTTCTCGTTCGGAGGCACTCCAATTGCAGGAATGGGCATCTGAGCATTGTTCAGCACCTTTCCGAGCACCGGAGCTGTGGGATTGTCCAAGCCATGCAGACATTGATGAGAGAACTGATATTTGGTCCTTGGGATGTACTCTGTATGCAATAATGTATGGGATGTCTCCTTTTGAGTACGCACTTGGAGAATCTGGTGGAAGCCTTCAATTAGCAATAGTAAATGCACAAATCAAATGGCCAGCGGGGCCTAATCCTCCATATCCTGATGCTCTCCACCAGTTTATAAAATGGATGCTCCAGCCCCAGGCTGCAGTTCGACCTCGGATCGACGATATCATCCTTCATGTTGACAAGTTGATCGCTAAGTTTTCTACTGAGACAAACAGGGCACGAGACAGAAGCTGCACATTGATCGTCGGCTGGATCGCCATCCTCTCCGCCGTTCACGTCCGCCAACACGGCGGCACCGATTGCCAGAAGTTTCTTCAGGACCCTGTTCTCATCGTCGGAGTCTTCTTCGTCGTCGTTTCGTTGCTCGGCCTCATCGGATCCTGCTGCCGCCTCAATTCCATCCTCTATCTCTACCTCATTGTCATGTTCTTGTTGATATTAGGGCTCATGGCCTTCACAGTTTTCTCCCTATTGGTCACCAATAAAGGAATTGGACAGGCCGTGTCTGGAAGAGGATACAAGGAAAATCGCCTTGGGGATTACTCGCATTGGCTTCAGAATTACGTCGTTGGTAATGCCAATTGGATTCGTGTTCGTAGCTGTTTGGTTGATGCGCCCATTTGCCGGAGCCTCGCTTCCAATTTCCACGGAAAACAGGCTGATTTCTACAAGCAGAATCTCTCCCCCATACAGTCTGGCTGTTGCAAGCCACCGTCCTACTGCGGGTTCAAGTTCAAGAACGCCACATTCTGGATAGTCCCTGAAGCAGGGCCGGCGGTGCCGGACAGCGACTGCACCACCTGGAGCAACAATCAAAATACTCTGTGCTACGACTGCAAATCCTGCAAGGGCGGAATTCTGGTCAACATCCGTAAGGAATGGAGGCGTCTTGCCATTTTCAACTCTTGTGCCCTCTTAGTCATCACTATCATCTATTGCATCGGCTGCTGCGCCACCAGAAACAACCATAAGTATAACAGATACAATGCCTATCCTTAA 1830 47.98 MGCSFSGLNALYDAVNGGGDIWINENRFRIVRQLGEGGFAFVFLVKEIISDSSSASGGGLAKKLKDPSRLSGDGTYALKKVLIQSSEQLELVREEIRVSSRFSHPNLLPLLDHAIISVKSSTEGSVKHEAYLLFPVHLDGTLLDNSQAMKAKKEFFSTLDVLEIFCQLCAGLKHMHSGESPYAHNDVKPGNVLVTHRKGKSPLAILMDFGSARPARREIRSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGMSPFEYALGESGGSLQLAIVNAQIKWPAGPNPPYPDALHQFIKWMLQPQAAVRPRIDDIILHVDKLIAKFSTETNRARDRSCTLIVGWIAILSAVHVRQHGGTDCQKFLQDPVLIVGVFFVVVSLLGLIGSCCRLNSILYLYLIVMFLLILGLMAFTVFSLLVTNKGIGQAVSGRGYKENRLGDYSHWLQNYVVGNANWIRVRSCLVDAPICRSLASNFHGKQADFYKQNLSPIQSGCCKPPSYCGFKFKNATFWIVPEAGPAVPDSDCTTWSNNQNTLCYDCKSCKGGILVNIRKEWRRLAIFNSCALLVITIIYCIGCCATRNNHKYNRYNAYP 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7995368 8000189 - CmaCh13G010510.1 Cma13g01051 306878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01051 609 ProSiteProfiles Protein kinase domain profile. 28 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01051 609 PANTHER - 1 344 - -
Cma13g01051 609 Pfam Protein kinase domain 74 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01051 609 CDD STKc_16 27 341 - -
Cma13g01051 609 Pfam Tetraspanin family 357 595 IPR018499 GO:0016021
Cma13g01051 609 ProSitePatterns Protein kinases ATP-binding region signature. 34 63 IPR017441 GO:0005524
Cma13g01051 609 SMART serkin_6 28 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01051 609 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 344 - -
Cma13g01051 609 Gene3D Transferase(Phosphotransferase) domain 1 16 354 - -
Cma13g01051 609 SUPERFAMILY Protein kinase-like (PK-like) 20 335 IPR011009 -
Cma13g01051 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01051 K08856 STK16; serine/threonine kinase 16 [EC:2.7.11.1] - csv:101208936 649.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00242 Cma13g01051 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01051 Cma-Chr13:7995368 Cma02g00870 Cma-Chr2:5073236 4.48E-63 dispersed
Cma11g00242 Cma-Chr11:1231938 Cma13g01051 Cma-Chr13:7995368 1.86E-107 transposed
Cma18g00032 Cma-Chr18:131799 Cma13g01051 Cma-Chr13:7995368 3.82E-148 transposed
Cma10g00270 Cma-Chr10:1202046 Cma13g01051 Cma-Chr13:7995368 0 wgd
Cma11g00237 Cma-Chr11:1207021 Cma13g01051 Cma-Chr13:7995368 8.77E-157 wgd
Cma13g01051 Cma-Chr13:7995368 Cma18g00012 Cma-Chr18:51874 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g392 . . . . . Bpe13g00333 Bma06g00023 . Cmo13g01092 . . Cma11g00242 . Car11g00222 Sed01g3903 . Cpe04g01429 Bhi02g00030 Tan09g1974 Cmetu02g1605 . Hepe09g0309 . . Cla06g01504 Cam06g1658 Cec06g1720 Cco06g1715 Clacu06g1625 Cmu06g1574 Cre06g2384 . . . . Lsi02g00151 Csa01g00636 Chy12g01466 Cme12g01909 . . . . . . . . Sed01g2263 . Cmo11g00247 Cma13g01051 . Car13g00884 . Cpe09g01147 . Bhi08g01042 Tan05g2309 Cmetu12g1411 Lac10g0200 Hepe07g2430 . . Cla04g01123 Cam04g1176 Cec01g1688 Cco01g1736 Clacu04g1204 Cmu04g1183 Cre01g1481 Lsi06g01368 Csa01g00308 Chy02g02430 Cme02g01785
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002794 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 1 2 0 1 2 2 2 2 2 2 3 2 2 2 0 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69035 PF00069 Pkinase 1.10E-27 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01051 Cma_Chr13 FPKM 15.911217 17.790182 12.858578 15.607827 12.767713 14.383877 14.562847 14.271999 14.014188 13.864838