Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01053 ATGTGTGTAATGGATGAAGATTTGGGGTTTGCTGAAAACCCATTTAATGAGTTGAAGATGATGATGAGAAGAGAAGGCGATGAGGAAGATGAATCAAACGGTTCATGTGGTTTCCATAGAGAAATATTGTTCCCTTCAATGAACACTAATTGTAGTAATGTGTTCTCCTCTCCCAATTCCGCGTCTTGCGATACCGCTCTCGACGTGCACCGCCATCACCATCTCAGCGTGATGGCAGAGCGGAAGCTGAGAAGAATGATATCTAATCGGGAGTCGGCGAGGAGGTCGAGGATGAGGAAGAAGAAGCAGATCGAGGAGTTGCAATACCAGGTCGGGCAGTTGGAAGGTTCGAACCGTCAGCTGTCGGAGAAGCTGATACAGCTACTGGAATGCAACCAGCAGATCCTGCATGAGAATGCAGAGCTCAGACGCAAGTTAATCGAGGCGGTCCGGCCACGCTGCCGCTCACCGACGATGGCGGACGACTCATCTGACCCCCTCGCCTCCCCAGAAGATCGCCTAAAGGCCCTAATTTCTTGTCCTTCCGCGAGTACCAAATCCGGGTTCGAAAACGAATCTGCGGAAGGTGAATTTCAAGAAAATCAGCCGCTGATAGACGATAATCCTTGTTCTATCTGTGTAATTTGTTTTTCGGATGATGGAAAAGCGGAGAGAGGTAAGCTTGACTCCTGTGACCACTATTTTTGCTTCGTCTGCATTATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGCAGATTCACTGTTGTTCATAGAATTGCGAAGGATATCTGTCGTCTACGTGAACGAATTGTTAATATTCCAATGCGGAATCAGGATCGCTCTGTTATTGAAAATACTACGAATAGGGATCCATATGCAGAAACATGTTGTACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGCGATCTCTGTGATTCAGCTGCTCATACTTATTGTGTCGGCCTAGGTGCTAATGTGCCTGAAGGCGATTGGTTTTGCCATGATTGTACTATCTCCAGGGCTCAACATGCCGATCCTGAATTGAACACTGGTTACAATGATCAAAATCAAACAGAATCTGCTAGAGCCCACATCTCCATTTCCGATATAGTAAAAGAATCAAGTGCTCAAACAGTTGGCATACCTCGCAGAATAGCCGTTTTACATTCAAGTCACGAGCCACCTTCTATTGTCCCCAGTTGGAGAAGCAGAAGCAGCGTGGCCCATAAATCATTGCCTAGTCGTGGTGGTAGAGCTGCTGGAACAAGTGCAAGAACATTACATCGCTGTCGTAACATCCATAGCCATATAAGAGCATTACGTGAAAATTGGGGTGGCTTACGAAGGGGGTCACTGAGCTTTCCCGCTAGCAGCTCATCAACATATTGTGGCAACAGTTCCAAACGAGATATTGGTGCTGCAGTAAACAGCCAAACGGGTGAACCCCATTTTTCTACAGCCATTAACGTGCAGGCGACATCTGGACCTGAGTCTAATGGAAGCTCTTATGATGTTGAGAAGGCATGGAGGATGATGGAAATTGCAAAGGCAAAGGCCATACGCGAGGAAGATCAAACCTTGAAACATCCTGTTAGCAGACAAATGAACACAAAAATAAAAGATATTCATACAGCGAAGGGCCAACAGTTCAAAATCCAGAAGCTAAAGGAACCAGCAAAGCATAAGAAGGAAATGGGAAAGCAAAGATTGCCCGAGTTGGATAAGAAACTGTGTTGTCCTGTAGCAAGTAAGAAGAGTAAAGCTTCTGATGAGTTTTTTCCTACCAGCTCATCCAGTTATGGAGAATCCTCCCTGGGTAATATAGTCCAAACTTCTCGAGGTGATTTCAACTATGAAAATAGAAGAAAGCTATCAAACAAAATCGTGGATGAACTTTCTTCATCCTCCACAATGACACAAGCCTCAGAGAGAGGCCATGTGGCTCGTGAGGCTGGCAACGATCAGGATCCCAAAAGTGAGATACGAACACTGGTCAAGATCAACCTAAAACTCCTAAGCCGAGACAAAAATTTGGGATATGAAAGATACAAGGAAGTAGCAAGGCTTGCAACTCACACCATCATGGCAGCATGTGGTTTAGAACCCCCTCCAAAACCCAGCAAGCGATTCTTATCGTGCTCGGTTTGCAAGCACACAGAAGAAGAAGTCGGGCAGCTTCACAGGTCCACTCTGAGGCCAGAATCTTGCAGGGAATGCTTCCTGGTGTATGTGAAGGATGTTGTTAATGCCCTGATGTTAGAAAAACTGGAGTTTCTGTGTTTGCGTCCAAGTTCTAAATTCAGTTCAGTTCAGAAGAGTCACTTGTCAAAGCCTGTGAAAATCTTCGCTCTTATCAGATTCTTGGAGAAACTTATGTTGAAATTGGAGAATTGTTTTCTCCGGGATGAGAAGCATGTTTTTCTGGAGGAACAGTCAGAATTTTATAGAGTATTATAA 2481 45.22 MCVMDEDLGFAENPFNELKMMMRREGDEEDESNGSCGFHREILFPSMNTNCSNVFSSPNSASCDTALDVHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQVGQLEGSNRQLSEKLIQLLECNQQILHENAELRRKLIEAVRPRCRSPTMADDSSDPLASPEDRLKALISCPSASTKSGFENESAEGEFQENQPLIDDNPCSICVICFSDDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDICRLRERIVNIPMRNQDRSVIENTTNRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCTISRAQHADPELNTGYNDQNQTESARAHISISDIVKESSAQTVGIPRRIAVLHSSHEPPSIVPSWRSRSSVAHKSLPSRGGRAAGTSARTLHRCRNIHSHIRALRENWGGLRRGSLSFPASSSSTYCGNSSKRDIGAAVNSQTGEPHFSTAINVQATSGPESNGSSYDVEKAWRMMEIAKAKAIREEDQTLKHPVSRQMNTKIKDIHTAKGQQFKIQKLKEPAKHKKEMGKQRLPELDKKLCCPVASKKSKASDEFFPTSSSSYGESSLGNIVQTSRGDFNYENRRKLSNKIVDELSSSSTMTQASERGHVAREAGNDQDPKSEIRTLVKINLKLLSRDKNLGYERYKEVARLATHTIMAACGLEPPPKPSKRFLSCSVCKHTEEEVGQLHRSTLRPESCRECFLVYVKDVVNALMLEKLEFLCLRPSSKFSSVQKSHLSKPVKIFALIRFLEKLMLKLENCFLRDEKHVFLEEQSEFYRVL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8007284 8014298 + CmaCh13G010530.1 Cma13g01053 306880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01053 826 MobiDBLite consensus disorder prediction 400 432 - -
Cma13g01053 826 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Cma13g01053 826 Pfam bZIP transcription factor 81 139 IPR004827 GO:0003700|GO:0006355
Cma13g01053 826 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 167 764 - -
Cma13g01053 826 ProSiteProfiles Zinc finger PHD-type profile. 298 347 IPR019787 -
Cma13g01053 826 SUPERFAMILY FYVE/PHD zinc finger 291 347 IPR011011 -
Cma13g01053 826 PANTHER F18C1.6 PROTEIN 167 764 - -
Cma13g01053 826 Pfam Ring finger domain 213 254 IPR001841 -
Cma13g01053 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 373 IPR013083 -
Cma13g01053 826 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Cma13g01053 826 SMART PHD_3 300 345 IPR001965 -
Cma13g01053 826 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 142 IPR004827 GO:0003700|GO:0006355
Cma13g01053 826 Coils Coil 90 124 - -
Cma13g01053 826 Gene3D - 79 134 - -
Cma13g01053 826 SMART ring_2 301 344 IPR001841 -
Cma13g01053 826 SMART ring_2 213 253 IPR001841 -
Cma13g01053 826 CDD bZIP_plant_GBF1 82 130 IPR045314 GO:0003700|GO:0006355
Cma13g01053 826 ProSiteProfiles IQ motif profile. 640 668 IPR000048 GO:0005515
Cma13g01053 826 SUPERFAMILY RING/U-box 205 260 - -
Cma13g01053 826 SUPERFAMILY Leucine zipper domain 81 135 IPR046347 GO:0003700|GO:0006355
Cma13g01053 826 MobiDBLite consensus disorder prediction 638 664 - -
Cma13g01053 826 MobiDBLite consensus disorder prediction 404 418 - -
Cma13g01053 826 Pfam PHD-finger 301 345 IPR019787 -
Cma13g01053 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 263 IPR013083 -
Cma13g01053 826 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Cma13g01053 826 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01053 - - - cmo:103495032 950.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01053 Cma-Chr13:8007284 Cma15g00210 Cma-Chr15:1016332 1.83E-15 dispersed
Cma14g00805 Cma-Chr14:4072139 Cma13g01053 Cma-Chr13:8007284 4.35E-09 dispersed
Cma02g00926 Cma-Chr2:5500505 Cma13g01053 Cma-Chr13:8007284 1.49E-10 transposed
Cma11g01241 Cma-Chr11:8188074 Cma13g01053 Cma-Chr13:8007284 1.05E-06 transposed
Cma01g00434 Cma-Chr1:2191667 Cma13g01053 Cma-Chr13:8007284 1.95E-16 wgd
Cma13g01053 Cma-Chr13:8007284 Cma14g01138 Cma-Chr14:8826879 9.42E-16 wgd
Cma13g01053 Cma-Chr13:8007284 Cma18g01074 Cma-Chr18:8883631 3.48E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36142 PF00170 bZIP_1 2.90E-12 CL0018 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01053 Cma_Chr13 FPKM 10.808545 11.179792 19.895569 19.515244 8.018136 8.535706 8.265049 23.94665 24.936813 22.154839