Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01057 ATGTTTGAGCCCCAACATTTCGTCGATTTGCAAGACGACTCTGCTTTCGGCGATCAGAAATCATGGAATTCCGGCGACCACAACGCGTCCCCGACTCGCCGCCTCACTCACTCATCACTCCCAATCCCACCCATTTCAGCTTCGGCAACTACTGCTGCTGGCGCTAATGGCAATGTGGATCGTGAACTTTTCAACAATCTCGTCGCAATCGTACCCCTCGTTCAGTCTCTTATTGATCGGAAAGCGAGCAGTTCATTCAGGAAGCGGGGTTCAATGATTTACACTAAAACACCTTCTAGAGAATCATTACACAGGAAGATGGAACAGAAAGGAAGGCATAACGGCCAATCTATTCCAACCAAGAAGAAGAAAGACCATGGGGTGAAGGACCAAAGTAACAATGTTGATAGTAATTCAGATGCCGATGGCTTTTCGGTTTTCTCCTCAAGTTCTCTGGTCTCTGAAAGGGATAAAGAAGAACTAATCACATTGAGAGAACAAGTGGAAGATCTGCGAAAGAAATTGCTTGAAAAGGATGAACTTCTAAAATCAGCAGAGATGTCGAAGGACCAGATGAACAACGTTTATGCAAAACTCGATGCTTTGAATCTCCAGTCTGCAGAGAAGGATTCTCGAATAAAGATGATTCATTCCCAACTTTCAGATGCAAAGATTAAGCTTGCAGATAAGCAAGCTGCGTTGGAGAAGATACAATGGGAGGTAATGACATCAAATTCAAAAATAGAAGAACTTCAAGAAGAGCTAAAGTCATCGCAAGGAGACGTTTCATCATTTATGCTGTTACTCGAAGGCTTGTCAAAGAATGATTGCAATGAACGTGTTGAAGATTATAGTCTTTCAGTGTATCTCCCGGAGAGCTGTCCTTACATTGATGATTTGGACGATCTGAAAATGCAGGAAATGGAAGAAGCAAGACAAGATTATGTAGCTGCTGTTGCTGCTGCAAAGGCAAGGCAAGATGAAGAATCTATTGCTGCTGCTGCAGCTGCAAGGTCACGTCTTCAGGCATTTGTTTTCGAAACTTTAGATGATCAAAACAACCCTCGTAGCTTCGGAAGAAATTCTGAGGATTTATCTATTTCTAATTTGATGGGTTGTTTTTGTTTCCTCTCTTCTGTATTGGGTTTAAATGTTTTCTTGCAATTCCTTCTGCAGAGAGAGAAGGAGAAACAAATGGCGACCAAATCCGAGAAATTTTCAGCTGATTTTGTGATGGGTGGTGTCGCCGCGATTGTGGCTAAAAGTGCAGCGGCGCCGATTGAAAGGGTCAAGCTTCTGTTGCAGAATCAGGGAGAGATGATAAAGAGAGGGCATCTTAAGAAGCCTTATCTGGGCATTCATGACTGTTTCAGAAGAGTTTTGAGAGAAGAAGGGCCGTTGTCACTATGGAGGGGAAATCAGGCTAACGTCATTCGATATTTCCCTACTCAGGCTTTCAACTTTGCATTCAAAGGTTACTTCAAAACGAAATTCGGGCGCTCAAAAGAGAAGGATGGATACATCAAGTGGTTTGCAGGAAATATTGCTTCAGGAAGTGCTGCAGGAGCAACTACATCGTTTTTTCTGTATCATTTGGATTATGCACGCACTCGACTAGGCACCGATGCAACGGACGGTGGCAGAAACAGCCAGCGCCAATTTAAAGGGTTGCTAGATGTCTACAGAAAAACCTTGACAAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGTGTTTCAATTGTGGGAATTACTCTGTATAGGGGCATGTATTTTGGGATTTACGACACTTTGAAGCCTCTTGTTCTTGTTGGGCAGTTTGAGGGGAACTTTTTTGCTAGCTTCTTATTGGGGTGGAGTATCACAACATTTTCTGGGGTATGCGCTTATCCTTTCGACACGCTGCGACGAAGAATGATGCTTACCTCTGGACAAACCCTGAAGTACCACAGTGCTTTACATGCATTTTCCGAGATCATTCGCCATGAGGGTATCGCTGCTCTTTTTCGAGGAGTCACTGCCAATATGCTTGTTGGTGTTGCAGGGGCTGGTGTTCTTGCAGGTTATGATCAACTGCACGAAATTGCATGTCGACATGGTTACTCCTATGGCGGGCAACAACATCAAATAGCCTCGAAATGA 2142 43.74 MFEPQHFVDLQDDSAFGDQKSWNSGDHNASPTRRLTHSSLPIPPISASATTAAGANGNVDRELFNNLVAIVPLVQSLIDRKASSSFRKRGSMIYTKTPSRESLHRKMEQKGRHNGQSIPTKKKKDHGVKDQSNNVDSNSDADGFSVFSSSSLVSERDKEELITLREQVEDLRKKLLEKDELLKSAEMSKDQMNNVYAKLDALNLQSAEKDSRIKMIHSQLSDAKIKLADKQAALEKIQWEVMTSNSKIEELQEELKSSQGDVSSFMLLLEGLSKNDCNERVEDYSLSVYLPESCPYIDDLDDLKMQEMEEARQDYVAAVAAAKARQDEESIAAAAAARSRLQAFVFETLDDQNNPRSFGRNSEDLSISNLMGCFCFLSSVLGLNVFLQFLLQREKEKQMATKSEKFSADFVMGGVAAIVAKSAAAPIERVKLLLQNQGEMIKRGHLKKPYLGIHDCFRRVLREEGPLSLWRGNQANVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYIKWFAGNIASGSAAGATTSFFLYHLDYARTRLGTDATDGGRNSQRQFKGLLDVYRKTLTSDGIVGLYRGFSVSIVGITLYRGMYFGIYDTLKPLVLVGQFEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTLKYHSALHAFSEIIRHEGIAALFRGVTANMLVGVAGAGVLAGYDQLHEIACRHGYSYGGQQHQIASK 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8027109 8032472 + CmaCh13G010570.1 Cma13g01057 306884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01057 713 Coils Coil 220 261 - -
Cma13g01057 713 ProSiteProfiles Solute carrier (Solcar) repeat profile. 509 601 IPR018108 -
Cma13g01057 713 ProSiteProfiles Solute carrier (Solcar) repeat profile. 609 695 IPR018108 -
Cma13g01057 713 SUPERFAMILY Mitochondrial carrier 404 692 IPR023395 -
Cma13g01057 713 Coils Coil 154 188 - -
Cma13g01057 713 PRINTS Adenine nucleotide translocator signature 614 630 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma13g01057 713 PRINTS Adenine nucleotide translocator signature 406 418 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma13g01057 713 PRINTS Adenine nucleotide translocator signature 509 522 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma13g01057 713 PRINTS Adenine nucleotide translocator signature 483 495 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma13g01057 713 PRINTS Adenine nucleotide translocator signature 450 471 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma13g01057 713 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 399 706 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma13g01057 713 MobiDBLite consensus disorder prediction 16 38 - -
Cma13g01057 713 MobiDBLite consensus disorder prediction 13 38 - -
Cma13g01057 713 Coils Coil 305 325 - -
Cma13g01057 713 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 399 706 - -
Cma13g01057 713 Gene3D Mitochondrial carrier domain 399 701 IPR023395 -
Cma13g01057 713 Pfam Mitochondrial carrier protein 510 602 IPR018108 -
Cma13g01057 713 Pfam Mitochondrial carrier protein 404 500 IPR018108 -
Cma13g01057 713 Pfam Mitochondrial carrier protein 610 695 IPR018108 -
Cma13g01057 713 PRINTS Mitochondrial carrier protein signature 524 542 IPR002067 GO:0055085
Cma13g01057 713 PRINTS Mitochondrial carrier protein signature 574 592 IPR002067 GO:0055085
Cma13g01057 713 PRINTS Mitochondrial carrier protein signature 409 422 IPR002067 GO:0055085
Cma13g01057 713 PRINTS Mitochondrial carrier protein signature 618 640 IPR002067 GO:0055085
Cma13g01057 713 PRINTS Mitochondrial carrier protein signature 472 492 IPR002067 GO:0055085
Cma13g01057 713 PRINTS Mitochondrial carrier protein signature 422 436 IPR002067 GO:0055085
Cma13g01057 713 MobiDBLite consensus disorder prediction 89 142 - -
Cma13g01057 713 ProSiteProfiles Solute carrier (Solcar) repeat profile. 404 497 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01057 Cma-Chr13:8027109 Cma14g02077 Cma-Chr14:14402468 6.68E-13 dispersed
Cma18g00019 Cma-Chr18:76002 Cma13g01057 Cma-Chr13:8027109 0 transposed
Cma19g00993 Cma-Chr19:8627086 Cma13g01057 Cma-Chr13:8027109 3.54E-132 transposed
Cma13g01057 Cma-Chr13:8027109 Cma18g00016 Cma-Chr18:70629 3.38E-175 wgd
Cma13g01057 Cma-Chr13:8027109 Cma18g00016 Cma-Chr18:70629 3.38E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01057 K05863 - csv:101207715 548.51