Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01059 ATGCTTAGTGGGGTGGAGGGGTTAGCTTCTGGGGATTATGCGGATTGCTTTGATGATATCTCTTATTGTACCAAGGTTTTGTTTGTGAATCATGATTTGGAGCTGTTGGGGTTGAAGAAGTTTACAAGAACAAGGATAGTGATTTGGGTGTTGGGGTCAGGGAAGGGATTCGTGTCTGATGAGATGAATTCATCCACTAATTCACCTCTGAGAAGTAAATATTCGTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGTGGAGAATCAGAGCTTTGGGGAGCTGGAATTTCCCCAAATGGTTGGCAAGCAATTAGCTGATGAGTCTGTCAGCCATGGCCTGAATACCAAAATTGAAGAGGAGTCCACTTCTAAGCTCTCTGGCTCCATTGTAGACTCCAACAATCGGGATTCATCTCTTATTGATTTGAAGCTTGGCAGATTTATTGATCAAGGCGATGCTCATAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAGAATGCGAAGTCAAGGAGTGAATTTCCAGGCTGCGTTTTGCCAAGTCTATGGCTGTAACAAGGATCTCACCTCCTCTAAAGAGTATCACAAGAGACATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAACGGCATAGAACAGAGATTTTGTCAGCAATGTAGCAGGTTTCATTTGCTGGTTGAATTTGATGATGGTAAACGCAGCTGTCGTAAAAGGCTTGCAGGCCACAATGAACGCAGAAGAAAGCCTCAAGTCAGTTTTCACTCGGGAAGGGCACAGAGATTGCTTCAGCCATATAATGGTATTGGGGACAGCAGATTTCAGGAGAAAACTCCGACAGCAACTTCATTTATCTGCAAAGATATATTGTCTAGTGGTCTTTATTATCCAGAGAAGCTTGGAGACAATGATTGGTGTAAGCGTGTTCTAGTTGAGGGCAAGAATGACTATAATCCTATATCTGCAACTTCATTGAGCAACAGGCATTTGAATGTGAAATCTCCATTGCTTCCCTATGATTTTGAAGTACAGATTCCTCCTTTTCAAGAACATGGAACTAGTACAGCTCCTTCAGTAAACAACATGTTATGCGACACAACTTGCCAGTATTCCCATAATGTGGGAGGTCCTCATATTGATACAACACATCCTTTGTTCCACCACACTACCTTATCAAGCGAAGACTTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAACTGCATCGAACCATCCATCTATAGTTCACATTCCTCGTGCTTTCGTTATGTCCGAGAGTCCATCGAATTACAGCATGAGCGAACTCTCCGAAAAGCTCATGGGAGTGAGCTCACAGGCTTCTTCGACTGGGATTTCGAGTAAGTTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTCCGATATTGACGTGTGATCGTAATGATCGTACTGTCGCCTTTCAGATTCCTGATGGGGTTCTTCATAGATCGGGTTTGGTGAATTCCAAGGCTAATCTTTCGTATGAACACACTCCAACTATCGACTTACTACAACTTTCATCACAACTCCATCGAGTTGAACATCAAAGGCACTCCATGCAGGACTCGGCCTAG 1695 43.19 MLSGVEGLASGDYADCFDDISYCTKVLFVNHDLELLGLKKFTRTRIVIWVLGSGKGFVSDEMNSSTNSPLRSKYSLLGWEFKNPCSFVENQSFGELEFPQMVGKQLADESVSHGLNTKIEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKRMRSQGVNFQAAFCQVYGCNKDLTSSKEYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTPTATSFICKDILSSGLYYPEKLGDNDWCKRVLVEGKNDYNPISATSLSNRHLNVKSPLLPYDFEVQIPPFQEHGTSTAPSVNNMLCDTTCQYSHNVGGPHIDTTHPLFHHTTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQTASNHPSIVHIPRAFVMSESPSNYSMSELSEKLMGVSSQASSTGISSKFASGMSEAQMGPILTCDRNDRTVAFQIPDGVLHRSGLVNSKANLSYEHTPTIDLLQLSSQLHRVEHQRHSMQDSA 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8043290 8047265 + CmaCh13G010590.1 Cma13g01059 306886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01059 564 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 562 IPR044817 GO:0003677
Cma13g01059 564 ProSiteProfiles Zinc finger SBP-type profile. 188 265 IPR004333 GO:0003677
Cma13g01059 564 MobiDBLite consensus disorder prediction 161 179 - -
Cma13g01059 564 PANTHER 1 PROTEIN, PUTATIVE-RELATED 77 562 - -
Cma13g01059 564 Pfam SBP domain 191 264 IPR004333 GO:0003677
Cma13g01059 564 MobiDBLite consensus disorder prediction 160 179 - -
Cma13g01059 564 SUPERFAMILY SBT domain 189 269 IPR036893 GO:0003677|GO:0005634
Cma13g01059 564 Gene3D - 183 252 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01059 Cma-Chr13:8043290 Cma06g00089 Cma-Chr6:500744 4.28E-36 dispersed
Cma10g00286 Cma-Chr10:1271737 Cma13g01059 Cma-Chr13:8043290 0 wgd
Cma11g00223 Cma-Chr11:1115713 Cma13g01059 Cma-Chr13:8043290 0 wgd
Cma13g01059 Cma-Chr13:8043290 Cma18g00021 Cma-Chr18:93182 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36145 PF03110 SBP 6.10E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01059 - - csv:101206747 897.886