Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01059 ATGCTTAGTGGGGTGGAGGGGTTAGCTTCTGGGGATTATGCGGATTGCTTTGATGATATCTCTTATTGTACCAAGGTTTTGTTTGTGAATCATGATTTGGAGCTGTTGGGGTTGAAGAAGTTTACAAGAACAAGGATAGTGATTTGGGTGTTGGGGTCAGGGAAGGGATTCGTGTCTGATGAGATGAATTCATCCACTAATTCACCTCTGAGAAGTAAATATTCGTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGTGGAGAATCAGAGCTTTGGGGAGCTGGAATTTCCCCAAATGGTTGGCAAGCAATTAGCTGATGAGTCTGTCAGCCATGGCCTGAATACCAAAATTGAAGAGGAGTCCACTTCTAAGCTCTCTGGCTCCATTGTAGACTCCAACAATCGGGATTCATCTCTTATTGATTTGAAGCTTGGCAGATTTATTGATCAAGGCGATGCTCATAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAGAATGCGAAGTCAAGGAGTGAATTTCCAGGCTGCGTTTTGCCAAGTCTATGGCTGTAACAAGGATCTCACCTCCTCTAAAGAGTATCACAAGAGACATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAACGGCATAGAACAGAGATTTTGTCAGCAATGTAGCAGGTTTCATTTGCTGGTTGAATTTGATGATGGTAAACGCAGCTGTCGTAAAAGGCTTGCAGGCCACAATGAACGCAGAAGAAAGCCTCAAGTCAGTTTTCACTCGGGAAGGGCACAGAGATTGCTTCAGCCATATAATGGTATTGGGGACAGCAGATTTCAGGAGAAAACTCCGACAGCAACTTCATTTATCTGCAAAGATATATTGTCTAGTGGTCTTTATTATCCAGAGAAGCTTGGAGACAATGATTGGTGTAAGCGTGTTCTAGTTGAGGGCAAGAATGACTATAATCCTATATCTGCAACTTCATTGAGCAACAGGCATTTGAATGTGAAATCTCCATTGCTTCCCTATGATTTTGAAGTACAGATTCCTCCTTTTCAAGAACATGGAACTAGTACAGCTCCTTCAGTAAACAACATGTTATGCGACACAACTTGCCAGTATTCCCATAATGTGGGAGGTCCTCATATTGATACAACACATCCTTTGTTCCACCACACTACCTTATCAAGCGAAGACTTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAACTGCATCGAACCATCCATCTATAGTTCACATTCCTCGTGCTTTCGTTATGTCCGAGAGTCCATCGAATTACAGCATGAGCGAACTCTCCGAAAAGCTCATGGGAGTGAGCTCACAGGCTTCTTCGACTGGGATTTCGAGTAAGTTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTCCGATATTGACGTGTGATCGTAATGATCGTACTGTCGCCTTTCAGATTCCTGATGGGGTTCTTCATAGATCGGGTTTGGTGAATTCCAAGGCTAATCTTTCGTATGAACACACTCCAACTATCGACTTACTACAACTTTCATCACAACTCCATCGAGTTGAACATCAAAGGCACTCCATGCAGGACTCGGCCTAG 1695 43.19 MLSGVEGLASGDYADCFDDISYCTKVLFVNHDLELLGLKKFTRTRIVIWVLGSGKGFVSDEMNSSTNSPLRSKYSLLGWEFKNPCSFVENQSFGELEFPQMVGKQLADESVSHGLNTKIEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKRMRSQGVNFQAAFCQVYGCNKDLTSSKEYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTPTATSFICKDILSSGLYYPEKLGDNDWCKRVLVEGKNDYNPISATSLSNRHLNVKSPLLPYDFEVQIPPFQEHGTSTAPSVNNMLCDTTCQYSHNVGGPHIDTTHPLFHHTTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQTASNHPSIVHIPRAFVMSESPSNYSMSELSEKLMGVSSQASSTGISSKFASGMSEAQMGPILTCDRNDRTVAFQIPDGVLHRSGLVNSKANLSYEHTPTIDLLQLSSQLHRVEHQRHSMQDSA 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8043290 8047265 + CmaCh13G010590.1 Cma13g01059 306886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01059 564 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 562 IPR044817 GO:0003677
Cma13g01059 564 ProSiteProfiles Zinc finger SBP-type profile. 188 265 IPR004333 GO:0003677
Cma13g01059 564 MobiDBLite consensus disorder prediction 161 179 - -
Cma13g01059 564 PANTHER 1 PROTEIN, PUTATIVE-RELATED 77 562 - -
Cma13g01059 564 Pfam SBP domain 191 264 IPR004333 GO:0003677
Cma13g01059 564 MobiDBLite consensus disorder prediction 160 179 - -
Cma13g01059 564 SUPERFAMILY SBT domain 189 269 IPR036893 GO:0003677|GO:0005634
Cma13g01059 564 Gene3D - 183 252 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01059 - - - csv:101206747 897.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01059 Cma-Chr13:8043290 Cma06g00089 Cma-Chr6:500744 4.28E-36 dispersed
Cma10g00286 Cma-Chr10:1271737 Cma13g01059 Cma-Chr13:8043290 0 wgd
Cma11g00223 Cma-Chr11:1115713 Cma13g01059 Cma-Chr13:8043290 0 wgd
Cma13g01059 Cma-Chr13:8043290 Cma18g00021 Cma-Chr18:93182 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50670 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50670 60.8 9.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36145 PF03110 SBP 6.10E-31 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01059 Cma_Chr13 FPKM 4.239525 3.288998 7.102394 7.311125 10.990889 12.034757 12.568769 10.713717 9.872396 12.233114