Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01062 ATGAATTCAGACCAACACAAATTCCTGACTGTCGGTTTCTTTTTAGCTATGATTTCTGTGGCAGGGGCATACGACTCGCTCGACCCGAATGGAAACATCGAAGTCAAATGGGATGTCATGTCCTGGACTGCAGATGGTTATGTGGCGACTGTGACCATAACCAACTTTCAGATGTATCGACATATCAGGAGTCCTGGATGGAGCTTGGGATGGGTATGGGCAAAGAGAGAGGTCATCTGGTCCATGCAGGGAGCTGAAGCTGCTGATCAAGGAGATTGTTCCACATTTACAGAAACTATGCCACACAGCTGCAAACGAGACCCATTGGTGGTTGACTTGCTTCCTGATGCTCCTTATAACCAACAGGTGGCTAGGTGCTGCAAAGGTGGTGTCTTGACCTCTTGGGGTCAAGATCCTTCTTCTGCTGTCTCTGCCTTCCAATTGACTGTTGGTCACTCTGGTAATTCAAACAAAACAGTGAGACTTCCCAAGAATTTCACCTTCTATGGTCCGGGGCGAGGCTATACATGTAGCCACCCAAAGATTGCTCCCAACTCAGCTTTCTACTCATCTGATGGTCGTCGAAAAACTTACGCATCGATGACTTGGAATGTGACATGCACTTACACGCAGTTTCTTGCTTCTGAAACGCCAACCTGCTGTCTCTCCATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTCAAGCGTGTGCTTGTGGCTGCCAAGACAGAACGGCATGTATTCTGAAGGAATCAGATCTTGATGAAAGCGTTACGGGGTTGAATGCTCTATTGCTGCAGTTCACGGCACATAACTGTCCCATTCAAGTCCACTGGCATGTCAAGGAAAACTACAAGGGGTATTGGCGGCTCAAGATAACCATCACCAATCTCAACTATCGACTTAACTATTCACAATGGACTCTGGTAGTGGAGCACCCAAATTTCAGCAACATAATGGAAGTTTATAGCTTTGTCTATAGGCCAATTGCCCCCTTCATCTCTAACAACGGTACAGCTCTGTTCTATGGCTTGAAATCTGTGAATGATGTGCTACTTGAAGCAGGGCCAAATGGAAACGTTCAGTCAGAGATGATTTTGCAGAAGGATTCAGCCTTTACGTTGGAACAAGGCTGGGCTTTCCCTAGAAAAGTGTACTTCGATGGAGATGAATGTGTGATGCCGCTGCCTGAATCCTTCCCCTTCCTACCCAACTTGGCTAATGCAAATCCAGTGCCATTGTCAGCGCTAGCTTGCATTTTGGTTGCCATCTTCGTTGCGCTGTTATCTTAG 1296 46.45 MNSDQHKFLTVGFFLAMISVAGAYDSLDPNGNIEVKWDVMSWTADGYVATVTITNFQMYRHIRSPGWSLGWVWAKREVIWSMQGAEAADQGDCSTFTETMPHSCKRDPLVVDLLPDAPYNQQVARCCKGGVLTSWGQDPSSAVSAFQLTVGHSGNSNKTVRLPKNFTFYGPGRGYTCSHPKIAPNSAFYSSDGRRKTYASMTWNVTCTYTQFLASETPTCCLSMSSFYNSKITPCQACACGCQDRTACILKESDLDESVTGLNALLLQFTAHNCPIQVHWHVKENYKGYWRLKITITNLNYRLNYSQWTLVVEHPNFSNIMEVYSFVYRPIAPFISNNGTALFYGLKSVNDVLLEAGPNGNVQSEMILQKDSAFTLEQGWAFPRKVYFDGDECVMPLPESFPFLPNLANANPVPLSALACILVAIFVALLS 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8051454 8053980 + CmaCh13G010620.1 Cma13g01062 306889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01062 431 PIRSF COBRA 3 431 IPR006918 GO:0010215|GO:0031225
Cma13g01062 431 Pfam COBRA-like protein 47 210 IPR006918 GO:0010215|GO:0031225
Cma13g01062 431 PANTHER PROTEIN COBRA 10 426 IPR006918 GO:0010215|GO:0031225
Cma13g01062 431 PANTHER COBRA-LIKE PROTEIN 10 426 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00218 Cma13g01062 CCT
Cma10g00289 Cma13g01062 CCT
Cma10g00289 Cma13g01062 ECH
Cma11g00218 Cma13g01062 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01062 Cma-Chr13:8051454 Cma04g00541 Cma-Chr4:2746738 3.35E-137 dispersed
Cma16g00850 Cma-Chr16:5020925 Cma13g01062 Cma-Chr13:8051454 8.08E-30 dispersed
Cma01g00420 Cma-Chr1:2113623 Cma13g01062 Cma-Chr13:8051454 1.41E-178 wgd
Cma10g00288 Cma-Chr10:1279530 Cma13g01062 Cma-Chr13:8051454 0 wgd
Cma11g00218 Cma-Chr11:1105995 Cma13g01062 Cma-Chr13:8051454 0 wgd
Cma13g01062 Cma-Chr13:8051454 Cma14g01158 Cma-Chr14:9168574 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01062 - - csv:101203708 728.398