Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01067 ATGAACAAATTCTTTTCTCGCAAACTTGCATCAAGGCTTTCGAATTCCTATGGGAATTCTCACTATTGCAGGGATTGCGCTTCTTTTGCCACACAAGTGCGAACCAGTAACCAAAACTACTTCTATGGCTCCTTCATCACTCGCCCGGTTAAGGATCACTCGCGTTCATGGAGTTCACATCGAAGTTGTACCGAGAAAATTCATGGGTTTTTCTCAGGCCCGGTGGTCGGAAAGCGATTCATATTGAATCCTTCAAGCACCCTTTTCAAGGGGTCCATTAAGAGTCTAGTAGAAAGGTCTCTCTTTATGGGAAGCCCATTTTCGAAACTGAAATTTCAGTTGAAACCAGGTTTTGATCATCGATGGCCAGGCAGGAGGGCATGGTTTCAAAGGCTGACGACTAATGATGTAGTGTTGGGGTTGATTATAGCTAATGTTGCTGTTTTCCTCCTCTGGCGGATTGCTGATCCTATCTTTATGTCAAAAAACTTTACTATCTCTGTAGAAAATGTTAGAAGCGGACGCATACATACATTGATTACATCAGCCTTCAGTCACGTAGAAATTGGCCATATAGTATCCAACATGATTGGACTATACTTCTTTGGGATGAACATCGGTCGAGTGTTTGGTCCTGAGTTTTTGTTGGGATTGTATCTGGCTGGAGCAATTGGTGGGTCAGCATTTTACTTGGCACATCATCTGTTTCAAGCATCATCCTCAAAGAGCCGGCCATTTTGGGGCAAGGATCCTGCACGAGCACAAGGATTGGGTGCAAGTGGAGCTGTAAATGCTATCATGCTGCTTGATATATTCCTCTTCCCAAAGTCGACCCTCTATCTCGAATTCTTTATACCTGTTCCTGCCATCTTACTGGGCATTTTTCTCATTGGAAAAGACATGTTGAGGATACTAGAGAATGACAGCCAAATTTCAGGATCTGCACACCTGGGGGGTGCTGCAGTTGCAGCCTTAGCCTGGGCCCGAAGGAGAAGATTGAGGGTCAGTGAGCCGCCGATTCGCAAATGGGCTGCCCCCGTGAAGAACGACGGCGCTACATCCAACAAAAGAAGGGAAATTTTGAGCTGCCCTCTAACGATATTCAATGCTACGATCTTCTTTTTTATATTGGTCATGGATGTTTCAGAATGTGACACAACCGAAGGCTTGGAGCATAAAATGAAAAAGAGAAAGCAAGAACAGTTTGATGATGCTCCTGTAGGAAACAATATGAGCAGTGTTCATTCTGGTTCTGAAGATGCATCTTCAATGGATAAAATCCTCTCTGAAAATGATTCTGCTTCTGCCATGTTCATTATATGCTCTAAGTTGGAATCTGAAACAGAAAAGATGTGTAATGTTCATGAAAAGAAGCAGGACGATGACCGAAAAATGTCCGAGGATATGGCGACAGAGCATGGAAATATAAATGGTTCTGGTAATCTTATATATAGTGTTGAAATGGAAGAGCCAAGTTCCATGGATACTTACAAAGTAGAGTCTGGAATCTCTGAAGATACAGGTGGTATGAGAAATCATGATGATCATGAAAACGTTGTCAATGTTACCGAAGAACTGAGCGAGGAGACGATAGATGCAAGGAAGGATTATCATTCTAGAGAACAATTCTCCGACATTGGTAATTATTTTCCATGTAAAGAGCAGGAAAATGAGAGGGATCACTCATTGAAAAGTTCCGTTGTAGAACAGATAAATGGGGGAGGCACTGTGGAGGAAGCTTCTGTTTTCGGTTCGGTTGGTGAGCATGATGATGAGACTTCAACAAGCAAGGAACTGATTACATCAACTCCTTGCTGCATACCTCCTGAACTGGATAATGCTGAAACTGTGAAGGAAGAAGTTGTATGTTTCTCAGGTTCTGGTGAGACGAGCAGTGGTATTGACGCTATCATCGAAGAGAAAACTCCGACACTAGTATTGGATACTTCAGAGAAAGGGGATTCTATTGGTTGTTCAAGGAAAAAGCTTCTTGTTCTCGATGTAAACGGACTGCTTGCAGATTTTATTTGTTATGTTCCATATGGATATAAGCCAGACCTTGTAATTGGACAAAAAGCAGTGTTCAAGAGGCCATTTTGTGACGATTTTATCAAGTTCTGTTTCGAAAGATTCGAGGTGGGCGTTTGGTCATCGAGAACTCGGAGAAATGTGGACATGGCCATAGATTTTCTAATGGGAGACTTCAGACAAAAATTACTATTTTGCTGGGATCAGTCACAGTGTACCGACACCACGTTCTCAACCGTTGAGAACAAGCACAAGCCTTTAGTCTTGAAGCAAATCAAGAAGCTGTGGAAATACCTTAAGCCACGAGAGTTCAATGCATCAAACACCCTACTGTTGGATGATTCCCCACACAAGGCATTGTGCAATCCGGCAAACACTGCAATTTTTCCTGTAACATATCGGTTTAGGGATACCGACGATACGTCGTTAGGACCAGGGGGCGATCTTCGGGTTTATCTGGAAGGTTTATCAATGGCAGAAAATGTTCAAAAATACGTCGAGCGGAATCCTTTCGGTCAACGCCCCATTACAGAAAAGAACCCGTCTTGGAAGTTTTATAGGCGGATCATATATTTCGTTGAGCGCAGAAACGATCAGGAGGATACCAATTCCTTCATATGGAACTGA 2655 42.9 MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTSNQNYFYGSFITRPVKDHSRSWSSHRSCTEKIHGFFSGPVVGKRFILNPSSTLFKGSIKSLVERSLFMGSPFSKLKFQLKPGFDHRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLITSAFSHVEIGHIVSNMIGLYFFGMNIGRVFGPEFLLGLYLAGAIGGSAFYLAHHLFQASSSKSRPFWGKDPARAQGLGASGAVNAIMLLDIFLFPKSTLYLEFFIPVPAILLGIFLIGKDMLRILENDSQISGSAHLGGAAVAALAWARRRRLRVSEPPIRKWAAPVKNDGATSNKRREILSCPLTIFNATIFFFILVMDVSECDTTEGLEHKMKKRKQEQFDDAPVGNNMSSVHSGSEDASSMDKILSENDSASAMFIICSKLESETEKMCNVHEKKQDDDRKMSEDMATEHGNINGSGNLIYSVEMEEPSSMDTYKVESGISEDTGGMRNHDDHENVVNVTEELSEETIDARKDYHSREQFSDIGNYFPCKEQENERDHSLKSSVVEQINGGGTVEEASVFGSVGEHDDETSTSKELITSTPCCIPPELDNAETVKEEVVCFSGSGETSSGIDAIIEEKTPTLVLDTSEKGDSIGCSRKKLLVLDVNGLLADFICYVPYGYKPDLVIGQKAVFKRPFCDDFIKFCFERFEVGVWSSRTRRNVDMAIDFLMGDFRQKLLFCWDQSQCTDTTFSTVENKHKPLVLKQIKKLWKYLKPREFNASNTLLLDDSPHKALCNPANTAIFPVTYRFRDTDDTSLGPGGDLRVYLEGLSMAENVQKYVERNPFGQRPITEKNPSWKFYRRIIYFVERRNDQEDTNSFIWN 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8076664 8086020 + CmaCh13G010670.1 Cma13g01067 306894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01067 884 Gene3D - 131 336 IPR035952 -
Cma13g01067 884 Gene3D - 625 848 IPR023214 -
Cma13g01067 884 SMART forpap2 660 817 IPR004274 -
Cma13g01067 884 ProSiteProfiles FCP1 homology domain profile. 657 832 IPR004274 -
Cma13g01067 884 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 394 869 - -
Cma13g01067 884 MobiDBLite consensus disorder prediction 395 420 - -
Cma13g01067 884 Pfam NLI interacting factor-like phosphatase 662 839 IPR004274 -
Cma13g01067 884 SUPERFAMILY HAD-like 659 838 IPR036412 -
Cma13g01067 884 MobiDBLite consensus disorder prediction 405 420 - -
Cma13g01067 884 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 394 869 - -
Cma13g01067 884 Pfam Rhomboid family 172 331 IPR022764 GO:0004252|GO:0016021
Cma13g01067 884 SUPERFAMILY Rhomboid-like 135 328 IPR035952 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01067 - - - cmo:103492827 623.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00412 Cma-Chr1:2084874 Cma13g01067 Cma-Chr13:8076664 1.15E-82 wgd
Cma10g00292 Cma-Chr10:1298437 Cma13g01067 Cma-Chr13:8076664 5.92E-59 wgd
Cma11g00214 Cma-Chr11:1074741 Cma13g01067 Cma-Chr13:8076664 4.44E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g453 . . . . . . . . Cmo13g01111 . . . . . . Cpe20g00083 . . . . . . . . . . . . . . . . Cone16ag0216 . . Lsi02g00129 Csa01g00612 Chy12g01488 Cme12g01929 . . Bda11g01765 . . . . . Sed08g2128 . . Cma13g01067 . Car13g00902 . . . Bhi08g01072 Tan05g2345 Cmetu12g1181 Lac10g0175 Hepe07g2452 . . Cla04g01146 Cam04g1200 Cec01g1712 Cco01g1756 Clacu04g1227 Cmu04g1207 Cre01g1504 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013596 0 3 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01067 Cma_Chr13 FPKM 5.27685 5.760851 5.06276 4.904751 6.679095 5.105918 6.817849 3.443187 2.90226 3.266554