Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01068 ATGGCTGCGAAGCTTCTGCATTCTTTAGCTGATGAAAATCCAGATCTGCAGAAGCAATTAGGATGCATGACTGGGATTTTGCAGTTGTTTGATCGTCAGCATATACTGGATGGAAGACATATGAAGCACAAGCGCCTCCCTCCTGGCACTTCTCATCTAGATATTGGTAGCACAGGAAAAGAGTACAATGTCTTACAGAGAGATGCTACGGTTATGTCCCTAAATGAGAGTTTCAATGAGAAACAAAGGTTTAATAAAGAATTATCAAGAGCTTCTTTCTCTTCTTGCTCATCTTCCTTATCCTCTAGTGAGTACAACAAAACAGCTCCATCGCAAGCTTCGTCATTCGATCAGATACTCTTATCAAGAACGCCCTCAAGGGATTCCGTAGCAAACCAGTCAAATACCTCTCCTCGTGTCGGGAAGCAACATCTTGATCTTCGAGATGTTGTGAAGGATTCTATGTATAGGGAAGCCAGAACGTTATCAGTCAAAACGCCTACTAATGAGGAACTACTGAGTCGTTCTATGAAGCATAGAGACTCTCCAAGGCCTTCACAGCTATCCCAATCTGCAGATGGGGCTTGTAAGGTTGATACAAATTGGAAACAAAAGATGCCTACTGATCTAAAGGAGTCTCTTCTAGTTCTTGCTAAGCTTCGAGATGCACCATGGTATTATAATGAAGCCATAGAGCACGAACGACCATTTCATGAAGTGAAAAATGGATCTTTGCCATCATTCTCGAGAGATGCTCCTCGGTTTTCTTGTGATGGGAGAGAGGTTGATAGATTGTCCTTTGAATCACGAGATACCATTCGATCAGCTCCAAAATTTAAAGACTTTCCAAGACTCTCATTGGACAGCAGGGAGAGTTCAATTCAGGATTCCAAATCTGTGTCAAACTCTATTAGACTTTCAAAGAACTTGCACAGTAGCGACCCTTCTGATCCTCCAAAACCGTCAGGATCTCGAAAGCATCCTCCTAGTGTCGTGGCTAAGTTAATGGGATTAGAAGCACTTCCAGGTTCACCTTTGGCTAGTGATACTCAAGTTAAAGGTGACCCTTTTGTTAGCTCATTGGATGGCACAAGCTCTATCAGGCCAATTAGAACTTGTGACTCTCCTCGGAACACATTGAAAGGCCCGACTTCACCACGATGGAAGAATCCTGATTTAGTCATGAAACCTATACCAAATTCGAAGTTTCCAGTAGAAGTTGCGCCGTGGAGGCAGCCAGATGGAGGTCGAGCCTCTCACAAACGTACTCTAAAGCATGCTAGAGGATTAGCTGCATCGTCTGATCACTTTCCTTCTGTTTATAGCGAAATCGAAAAAAGATTGGAAGACTTGGAGTTTAAACATTCAGGGAAAGATCTTAGAGCACTAAAACAGATCCTTGATGCTATGCAACCAAAGGGGCTTTTGGATACTAGAAATGAGGAGGAACCTTCTAACAGTGGAACTCAAAGAGACAACGAACCAAAACAGGATAGCGCTAGCGTTAATTCTAGGTTGATCAACGAACAAAGTCGGAAAAAGAACCAAAAGGCTGCAACAACTAGCAGGCCTGATTCTTCTAGGTGTAGGGAATCTCCTATTGTAATCATGAAACCAGCAAAACTTGTAGAAAAATCTGGAATTCCAGCTTCATCTGTTATTCGAATCGACGGTCTTCCTGGTTTCCCCAAGCTTGAGAAAGCTTCACATGGAAAAAGGAACACCAATGGTAGCCGAGCAATTAAAGATACGTCGCCTGAAACTAGTCACAAGGACTCCGGGGCGAGTTCCACCAAAAAGAAAGACGATGCAAAAAATGTAAGACCAACGCATTCTTCTTCAAAGCCTCAACAAAACACCATTAGTTCAATAAAAACCTCAGGGTCTGTGAGCCCAAGACTGCAACCGAAGAAGGTTGAGCAAGACAAACGATCTCGACCACCAACTCCTCCATCCGACACAAATAAAACTAGATGGAAATCCAACCGAAAAGGAACCGATTCAGGTTCTCCCGTTGGAAAACCGAGAGTGAAACCTTCCCATGTCTGCCAAATGGATGACCAATCGAGTGAAATAAGCAACGAGTCGAGAACTTTGAGTAACCAGGGTGATGACATATCTCAACTATCTGATAGTAATTTATCCTTGGACTCAAAGACAGATATTGAAGTCACCAGCAGTGAGCTTCCTTCTGACATAAATGGCAGCCATATTTTACAAATGAAGATTTCAAAGAACTCGGATTCTTGCTTAACGGAAAACGCAGAACTTGCTACACCTGCTCCTGAACATCCTAGTCCGATCTCCATTCTTGATGCTTCTATATATAGAGACAACGAACCGTCCCCGTCTCCGTCTTCTGTTAAGCAGACAAAAACCCTCAAAGGCAATAGGGAGTTGGGCTCTGGAAATTGTGGTGAATATCAATGGAGTGCCACAGATAACAGTGTGGAGCCTGGTCTTAGCACAGAAATCAACCGCAAGAAATTGCAAAACATTGACAACTTGGTTCAGAAGCTCAGGCGCCTGAACTCTCACTATGATGAAGCCAAAACAGATTACATTGCATCATTATGTGAGAATACTGACCCAGATAACAGATACATATCTGAAATATTGTTAGCTTCTGGCCTCTTACTTCGGGACCTTGGCTCGGGCTTGGCAACATTTCAACTCCATCCATCTGGTCATCCAATCAACCCCGAGTTGTTCTTCGTTTTGGAACAAACCAAGACAGGCAGTTTGCTAAGAAAAGATGACTGCAGCTCTCATAAAGTTACAGATTCAAAACTGAGCCAGGAAAAAGCTCACCGTAAACTCATTTTTGATGTTGTTAATGAGTTTCTTGCCAGGAAGTTGTCTGTTGTTGCTGCATCAACTGAGCCTTGGACAACATCCAGAAAACTAGCGACTAAAACTCTTAGTGCTCAAAAGCTTTTGAAGGAGCTATGTTCCGAAATAGAACAGCTTCAAACCAAGAAACCCGAATGCAACATCGAGGACGATGGTTTGAAAAACATCTTAAAGGAGGATGTGATGCAAAGATCTGAGAGTTGGACTGATTTCTATGGCGACATCTCCAACGTCGTCTTAGACGCTGAAAGATTGATCTTCAAAGATTTAGTCGACGAAATCGTGTATGTTGGGGCTGCTCATTTGCGCGCCAAGTCAGGCAGACGAAGACAGTTGTTTACCTGA 3198 43.06 MAAKLLHSLADENPDLQKQLGCMTGILQLFDRQHILDGRHMKHKRLPPGTSHLDIGSTGKEYNVLQRDATVMSLNESFNEKQRFNKELSRASFSSCSSSLSSSEYNKTAPSQASSFDQILLSRTPSRDSVANQSNTSPRVGKQHLDLRDVVKDSMYREARTLSVKTPTNEELLSRSMKHRDSPRPSQLSQSADGACKVDTNWKQKMPTDLKESLLVLAKLRDAPWYYNEAIEHERPFHEVKNGSLPSFSRDAPRFSCDGREVDRLSFESRDTIRSAPKFKDFPRLSLDSRESSIQDSKSVSNSIRLSKNLHSSDPSDPPKPSGSRKHPPSVVAKLMGLEALPGSPLASDTQVKGDPFVSSLDGTSSIRPIRTCDSPRNTLKGPTSPRWKNPDLVMKPIPNSKFPVEVAPWRQPDGGRASHKRTLKHARGLAASSDHFPSVYSEIEKRLEDLEFKHSGKDLRALKQILDAMQPKGLLDTRNEEEPSNSGTQRDNEPKQDSASVNSRLINEQSRKKNQKAATTSRPDSSRCRESPIVIMKPAKLVEKSGIPASSVIRIDGLPGFPKLEKASHGKRNTNGSRAIKDTSPETSHKDSGASSTKKKDDAKNVRPTHSSSKPQQNTISSIKTSGSVSPRLQPKKVEQDKRSRPPTPPSDTNKTRWKSNRKGTDSGSPVGKPRVKPSHVCQMDDQSSEISNESRTLSNQGDDISQLSDSNLSLDSKTDIEVTSSELPSDINGSHILQMKISKNSDSCLTENAELATPAPEHPSPISILDASIYRDNEPSPSPSSVKQTKTLKGNRELGSGNCGEYQWSATDNSVEPGLSTEINRKKLQNIDNLVQKLRRLNSHYDEAKTDYIASLCENTDPDNRYISEILLASGLLLRDLGSGLATFQLHPSGHPINPELFFVLEQTKTGSLLRKDDCSSHKVTDSKLSQEKAHRKLIFDVVNEFLARKLSVVAASTEPWTTSRKLATKTLSAQKLLKELCSEIEQLQTKKPECNIEDDGLKNILKEDVMQRSESWTDFYGDISNVVLDAERLIFKDLVDEIVYVGAAHLRAKSGRRRQLFT 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8087660 8092725 + CmaCh13G010680.1 Cma13g01068 306895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01068 1065 MobiDBLite consensus disorder prediction 142 159 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 475 489 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 490 509 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 471 712 - -
Cma13g01068 1065 Pfam DUF761-associated sequence motif 328 343 IPR032795 -
Cma13g01068 1065 Coils Coil 980 1000 - -
Cma13g01068 1065 Pfam Domain of unknown function (DUF4378) 866 1044 IPR025486 -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 610 634 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 342 431 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 288 329 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 124 141 - -
Cma13g01068 1065 Coils Coil 826 853 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 353 385 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 776 798 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 779 798 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 584 609 - -
Cma13g01068 1065 PANTHER LONGIFOLIA PROTEIN 1 1065 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 288 319 - -
Cma13g01068 1065 PANTHER LONGIFOLIA PROTEIN 1 1065 IPR033334 GO:0051513
Cma13g01068 1065 MobiDBLite consensus disorder prediction 124 196 - -
Cma13g01068 1065 MobiDBLite consensus disorder prediction 683 712 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01068 - - - csv:101202986 1745.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00213 Cma13g01068 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01068 Cma-Chr13:8087660 Cma18g00009 Cma-Chr18:41721 0 dispersed
Cma19g00015 Cma-Chr19:92968 Cma13g01068 Cma-Chr13:8087660 7.11E-28 transposed
Cma11g00213 Cma-Chr11:1070312 Cma13g01068 Cma-Chr13:8087660 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g459 Blo04g00797 . Bda06g00519 Bda15g00627 . . . Bma12g00962 Cmo13g01113 . . Cma11g00213 . Car11g00192 Sed08g0284 . Cpe04g01455 Bhi02g00090 Tan09g2035 Cmetu02g0174 . Hepe09g0278 . . Cla06g01534 Cam06g1692 Cec06g1755 Cco06g1754 Clacu06g1660 Cmu06g1606 Cre06g2418 Cone2ag0795 Cone16ag0214 Cone13ag0031 Cone19ag0040 Lsi02g00125 Csa01g00608 Chy12g01492 Cme12g01932 . Blo15g00341 Bda11g01764 Bda14g00886 Bpe07g00753 Bpe15g00573 Bma03g00858 . Sed08g2125 . Cmo11g00215 Cma13g01068 . Car13g00904 Car18g00008 . . Bhi08g01076 Tan05g2350 Cmetu12g0276 Lac10g0173 Hepe07g2455 . . Cla04g01147 Cam04g1203 Cec01g1715 Cco01g1760 Clacu04g1230 Cmu04g1210 Cre01g1506 . Csa01g00300 Chy02g02436 Cme02g01823
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003334 4 1 2 2 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01068 Cma_Chr13 FPKM 10.706286 12.590099 4.878773 5.035237 8.94276 8.335139 9.323741 3.41083 2.904408 3.298536