Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01069 ATGACAGGGAGAGTAAATAATATGATCTCAAAATTGAAGCAAGAGGGCGTTCATGTTGAAGCAAAACAAATGGAGGGCAAAAGGAAGAAGGGGCCTTCAAGGCAAGGGCCATTTCTTAGAGGCAATCCAAGAATTTTTAGAGTTTCTCCTTTGTTTGGAGGAAAAGACAGGCACAGCAAAGTTTGCACAATGAAGGGCTTAAGAGACAGAAGGATTAGGCTTTCAGCTCCCACTGCTATTCAACTTTATGATTTGCAAAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGACTGGCTGATGGATGTCACAAGATTTGATATTGATAAGCTCCCACCACTCCATTTTCCGAAAGATTTTGACCCAAATGCCTCGTTTCTTCATCATTTTGATATTGCAGATGCTGCAGCGAAGGCCAAACATGAAGAAACTGGGATGCTTTTGCTTCAGAAGTCGTCTCCTTCACCCAACCATGCTTCTTTTTCTGCTCTTCAGCTTCAAACCAACGCCATGACTGAAAACTGTTGCCATTTTGACCCTCCAAGCTTTCCATTCCCATTAATGGATCAGGCCAATCCAGCTTCATTTTCCTCACCTTCTGAGCAGTTGCTGTTCCGTCCATTGACGATGCCACCCGAAGTTTCTTCTTACCTTCCTAACGGTGGAAATTAA 675 43.7 MTGRVNNMISKLKQEGVHVEAKQMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNASFLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8093105 8093779 - CmaCh13G010690.1 Cma13g01069 306896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01069 224 MobiDBLite consensus disorder prediction 1 40 - -
Cma13g01069 224 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 138 IPR005333 GO:0003700
Cma13g01069 224 PANTHER TRANSCRIPTION FACTOR TCP17 9 138 - -
Cma13g01069 224 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Cma13g01069 224 MobiDBLite consensus disorder prediction 15 32 - -
Cma13g01069 224 Pfam TCP family transcription factor 54 125 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00212 Cma13g01069 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01069 Cma-Chr13:8093105 Cma18g00480 Cma-Chr18:2722292 7.82E-23 dispersed
Cma01g00411 Cma-Chr1:2080804 Cma13g01069 Cma-Chr13:8093105 4.48E-33 wgd
Cma11g00212 Cma-Chr11:1067558 Cma13g01069 Cma-Chr13:8093105 6.94E-41 wgd
Cma13g01069 Cma-Chr13:8093105 Cma14g01163 Cma-Chr14:9212725 2.65E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36146 PF03634 TCP 1.80E-23 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01069 - - cmax:111495302 462.611