Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01072 ATGAGGGAAGCAAGTAGTGGATGTGCGGATGACCTGACGCTGGGACTCTTGCCGGAGATGAAAAGAGGAAGGGAGGTTTCTGATTCTGAACCGCCGGACCTTACTCTTAGGCTCTCTGTTGGTGGGGTTTCTCGTCCGAAACCGAAGGAGAATTCGTTAACTCGATCCTCTTCGGTTATTGGAATGATTTCTCAGAACTCAGAGGCGTGGAAATGGGATATGCGGAGGCACGCGGCTTCGTTTCTTTCCTTGTCGAGATCTTGCTCTCTTCCGGTCGAGACGGACGAGCTCAGTCGGATGAAGCTCAAGCAGTTTCAATTCTTCAGAAGGCTGGAGGCTAGAAAGAGGCTGGCGGAGCAGAGGTATGGCAGAGCAGTTGCGGCGGCGGATGATGATAAGTTGGCCGTGGCGCCGCCATCGGCCTCTGAAATGGTAGCTTGGGCTGCCGCTTCTGCTGCAAAAAGTCCTGCCCTATGTCGTGCGATTGATAGGATCAAGTCCAACCATGGAACCCTCTACCGGAGTTATACAATGGATGGATATGGAAGTGTGGGATCAACAAAGGGCTCATCCAGTTCTCAATCATCACTGGAATCAACTGAAAGAGAGCCAGTAGTGAACTCAAAAACAATGGCATCAAGAAAACTCGACATACCGCCACAGATGAACCCAGCGAAAAGAGCTAGAGTTTCCAATGGCTGGATGGGAGGGGAGAGAGGGATGGACGTGATGAGGATGATGCCGAGCGTGTCGACAATCGGGGAGGGGCCGAACGGGAGGAAGGTAGAAGGGTTCTTGTACAAGTACATGAGGGGACAAATCTGCATAGTGTGTGTGTGCCATGGAAGCTTTCTTACTCCTGCAGAGTTTGTGAGACATGCTGGTGGGAGGGAGGTGGCTAACCCCATGAAACACATCCATGTTTGCTGTACCTCATTTGCATTGTAA 948 51.48 MREASSGCADDLTLGLLPEMKRGREVSDSEPPDLTLRLSVGGVSRPKPKENSLTRSSSVIGMISQNSEAWKWDMRRHAASFLSLSRSCSLPVETDELSRMKLKQFQFFRRLEARKRLAEQRYGRAVAAADDDKLAVAPPSASEMVAWAAASAAKSPALCRAIDRIKSNHGTLYRSYTMDGYGSVGSTKGSSSSQSSLESTEREPVVNSKTMASRKLDIPPQMNPAKRARVSNGWMGGERGMDVMRMMPSVSTIGEGPNGRKVEGFLYKYMRGQICIVCVCHGSFLTPAEFVRHAGGREVANPMKHIHVCCTSFAL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8107810 8109734 + CmaCh13G010720.1 Cma13g01072 306899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01072 315 MobiDBLite consensus disorder prediction 184 207 - -
Cma13g01072 315 Pfam Putative nuclear localisation signal 84 199 IPR032310 -
Cma13g01072 315 MobiDBLite consensus disorder prediction 184 208 - -
Cma13g01072 315 PANTHER AFP HOMOLOG 2 26 313 IPR031307 GO:0007165
Cma13g01072 315 Pfam Tify domain binding domain 276 307 IPR032308 -
Cma13g01072 315 PANTHER NINJA-FAMILY PROTEIN AFP1 26 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01072 - - - cmax:111495247 585.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01072 Cma18g00004 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01072 Cma-Chr13:8107810 Cma02g01668 Cma-Chr2:9426177 4.00E-22 dispersed
Cma18g00004 Cma-Chr18:9878 Cma13g01072 Cma-Chr13:8107810 2.85E-120 transposed
Cma13g01072 Cma-Chr13:8107810 Cma18g01103 Cma-Chr18:9025767 5.26E-29 wgd
Cma13g01072 Cma-Chr13:8107810 Cma04g01704 Cma-Chr4:8558766 3.34E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g464 Blo04g00792 . . . . . . . Cmo13g01118 Cmo18g00004 . . . . . Cpe20g00076 . . . . . . . . . . . . . . . Cone2ag0797 Cone16ag0212 . . Lsi02g00120 Csa01g00602 Chy12g01496 Cme12g01938 . . . Bda14g00883 . Bpe15g00578 Bma03g00853 . Sed08g2122 . . Cma13g01072 Cma18g00004 Car13g00908 Car18g00002 . . Bhi08g01081 Tan05g2358 Cmetu12g0092 Lac10g0151 Hepe07g2460 . . Cla04g01152 Cam04g1210 Cec01g1721 Cco01g1766 Clacu04g1237 Cmu04g1216 Cre01g1512 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010318 1 1 1 1 1 1 2 1 1 0 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01072 Cma_Chr13 FPKM 44.98798 53.049046 35.754826 32.979458 8.667699 9.88246 8.331555 74.533401 78.157242 77.49762