Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01074 ATGGAAGTTACAGGGAAATCTAGTTTCAATTTCGGAGCTTGCGAGAAGCCAAACTACCGGCTAACCGAGACCAAGTCAAAACTCGTGAAATTTGTTCTGTTTGCAGTACCGACCGATTTGTTATACTTGGCTACTAGGTTGGGAAATATGAGTATGGGGGACTGCGAATCAATTATACCAACCTCTGAAGGAGAGCAGCATGTCATAGCTGCATTTCAGCACCTAGCCAAGTTATTAAGAACAAGCCAGAACGTGAATGATGAATTGAAAAGGCTCCTTACCGATCTTGATTCTCATTTGACTTCCATGACTCTGTATACTCATTTACAGGATGGGAAGTTGAATGAGCTAGAATCGAGATTCAAATCTGCTGAGGAGAAGATTAGGAGATGGGAATCTAACGAATCCATGATATGGGATTCTGGACCCAAGGAAGCTTGTGAATATATGAAGGCTGTTGATGAAATTCATAAAGTTCAGGAAGGTCTAATAAGTCTGCCAGTAAATGACGGTAGGAAGCAAAAGGATCTTCTTTGCCAAGCTGAGTCTGTCATACAGTTCGCAATGGCAAGGCTAGAGCAGGAACTAGTCCATATTCTTGCACAAAACAAACTATATTTTGAGCCCAACTGTGTTCCCTTCCAGTCTGGTGGGTATGATGCTGTCTATAACGAGTCCTTTGCTTCAGTTGAGGACAGTTTGGAGGAGGAAACTTCCCAGAGAGAGAGTATTCCTGCTGTATGTATAGTAAACATGGTCCATCCACACGTGATCCCTCATCTTAAATCCATCGCAAATGCTATGTTTACTTCAAATTATATTCAGGAATTCTCCCTGGCTTTTGTTATAATGCGGAAAGATGCGTTGGATGAGTATTTGCTCATTCTCGAAATGGAGAGGCATAGCATCGGTGATTTGCAGACCATGGAGTGGGATGTCTTAAACGTGAAAATCAAGAAATGGATTTGGCTAATTAAAGTTGTTATTCGAGTCTACCTTGCTAGTGAACAAAGACTTTGTAACAATATATTTGAAGGCTTTGGATCTTATAGTGCAACCTGTTTTGCTGAAATTTCAGCAACTTCTATGCTCTGCCTATTGAATTTTGGCGAGGCCATAGCTATGACAACTCGTCGACCGGAAAAGCTGTTTCGCTTGCTTGACATGTACGAGGTCCTGGAAAATCTTCTTGTGGATATCGGTGCATTATTTTCAGAAGATACAGAAATGGGTTCTTTTCTCAAAGCTGAGTTCCATAATCTTTTCATGAAATTAAGTGATTCTGCAAGGGCCACGTTTGTAGATTTTGGAAGTCTCATCGCACGTTCCATATCAACAAGCCCTTTTCCGGGTGGTGGTGTTCATCATCTCACTAAGTATGTTATGAACTACACTAGGACCCTCACTGTCTACAGAGACTCCCTTGTTTTCCTTCTCCGAGATGAAGCAGCAGATAGCTTAGGTCCAGCTTCTGAGCTGCTGAACGAAATCAATAGTATGCCTTGCCCATTGGCTTTCCACCTTCAGTCGATCACTTCACAGTTAATATCCAATCTGAACAACAAATCCAAGTTGTACAATGATGATGCTCTACGACATATTTTTTTAATGAATAACATTCATTATATGATTCAAAAGGTTAAAGGCTCTGAACTCAGAGCCTTTTTTGGAGGTGAGTGGATACGAGAACATAACAGAATGTTACAGAGCCACGCCAACATCTATATGAGAGTCACCTGGCAGTCGGTTATTTCTCTGCTCAGGCTTGATGGTGATGAAACCAACACTCCGAAGGCAGTTTTTAAAGAAAAGTATAGGGCCTTCAATGTAGCTTTTGAGGAGATATATAAGAACCAAACTGGATGGAATGTCTCAGATCCTGAACTACGTGATGACTTGCACATTCTAACATCAAATTGTGTAATTCAAGCATATCGATTCCTCTGCAACTTAAAGTCTCAATTTAACTGTGAAAGGTACATCAAATATACCATCGATGATCTGAGCAAGCATATACTGGATCTCTTTCAAGGCTCACCGGATTCGTTGCAAAGTTCACGCCGGAGATGA 2070 41.16 MEVTGKSSFNFGACEKPNYRLTETKSKLVKFVLFAVPTDLLYLATRLGNMSMGDCESIIPTSEGEQHVIAAFQHLAKLLRTSQNVNDELKRLLTDLDSHLTSMTLYTHLQDGKLNELESRFKSAEEKIRRWESNESMIWDSGPKEACEYMKAVDEIHKVQEGLISLPVNDGRKQKDLLCQAESVIQFAMARLEQELVHILAQNKLYFEPNCVPFQSGGYDAVYNESFASVEDSLEEETSQRESIPAVCIVNMVHPHVIPHLKSIANAMFTSNYIQEFSLAFVIMRKDALDEYLLILEMERHSIGDLQTMEWDVLNVKIKKWIWLIKVVIRVYLASEQRLCNNIFEGFGSYSATCFAEISATSMLCLLNFGEAIAMTTRRPEKLFRLLDMYEVLENLLVDIGALFSEDTEMGSFLKAEFHNLFMKLSDSARATFVDFGSLIARSISTSPFPGGGVHHLTKYVMNYTRTLTVYRDSLVFLLRDEAADSLGPASELLNEINSMPCPLAFHLQSITSQLISNLNNKSKLYNDDALRHIFLMNNIHYMIQKVKGSELRAFFGGEWIREHNRMLQSHANIYMRVTWQSVISLLRLDGDETNTPKAVFKEKYRAFNVAFEEIYKNQTGWNVSDPELRDDLHILTSNCVIQAYRFLCNLKSQFNCERYIKYTIDDLSKHILDLFQGSPDSLQSSRRR 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8116481 8119619 - CmaCh13G010740.1 Cma13g01074 306901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01074 689 Pfam Exo70 exocyst complex subunit 319 673 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma13g01074 689 Coils Coil 75 95 - -
Cma13g01074 689 PANTHER EXOCYST COMPLEX COMPONENT EXO70E2 74 683 - -
Cma13g01074 689 Coils Coil 114 134 - -
Cma13g01074 689 SUPERFAMILY Cullin repeat-like 134 676 IPR016159 -
Cma13g01074 689 Gene3D Exocyst complex component Exo70 126 686 - -
Cma13g01074 689 PANTHER EXOCYST COMPLEX PROTEIN EXO70 74 683 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01074 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101202747 985.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00035 Cma13g01074 CCT
Cma11g00035 Cma13g01074 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00449 Cma-Chr1:2254957 Cma13g01074 Cma-Chr13:8116481 7.81E-152 dispersed
Cma13g01074 Cma-Chr13:8116481 Cma18g00319 Cma-Chr18:1702191 2.21E-123 dispersed
Cma13g01074 Cma-Chr13:8116481 Cma13g00803 Cma-Chr13:6823642 1.52E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g659 . . . Bda15g00670 . Bpe13g00204 Bma06g00256 . Cmo13g01120 . . Cma11g00035 . . . Cpe20g00075 . . . . . . . . . . . . . . . . . . . Lsi02g00119 Csa01g00599 Chy12g01498 Cme12g01942 . . Bda11g01727 Bda14g00880 . . . . Sed08g2120 . . Cma13g01074 . Car13g00910 . . . Bhi08g01084 Tan05g2361 Cmetu12g0690 Lac10g0148 Hepe07g2463 . . Cla04g01154 Cam04g1212 Cec01g1723 Cco01g1768 Clacu04g1239 Cmu04g1218 Cre01g1514 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011638 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01074 Cma_Chr13 FPKM 4.147541 5.511336 2.316633 2.476098 6.370244 5.917158 6.951805 3.574925 3.296792 3.709155