Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01075 ATGGGAACAACGAAAGTGAAAGACGATGAACTTACGTTGATTAAGAAGCTAAGAGAGCCAGCAAAGGTCGTCGACATGGCTTTTCTTGGTAAAGTTGGAAAGATATTTAGCAAGAGTTCTGCATCATTGATCCGTTCGGATTTGCAACCTTCCAAACTGTCTATCTTTCAAAGTATTAGATTAATGTCAAGTTCGAAAGTTTTTGTTGGAGGCCTTTCTTATGGTACTGATGACCAGAGTCTGAAGGAAGCGTTCGACAAGTATGGGGAAGTAGTTGAAGCGAGAGTGATAACTGATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTTACCTTCACCGCGAACGAGGAGGCTTCCAGTGCCATTCAAGCGCTGGATGGACAGGATCTCCATGGCCGTAACATTAGAGTGAACTTCGCGACTGAAAGGTCTCGTGGTGCTGGTGGTTATGACGGCGGCAGTTCCGGCTATAATCGCTCCAGTTCATACCAGGGAGGAGGTGGTTACAATGACTGA 519 45.66 MGTTKVKDDELTLIKKLREPAKVVDMAFLGKVGKIFSKSSASLIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLKEAFDKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERSRGAGGYDGGSSGYNRSSSYQGGGGYND 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8119493 8122017 + CmaCh13G010750.1 Cma13g01075 306902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01075 172 SMART rrm1_1 66 139 IPR000504 GO:0003723
Cma13g01075 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Cma13g01075 172 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 168 - -
Cma13g01075 172 MobiDBLite consensus disorder prediction 155 172 - -
Cma13g01075 172 MobiDBLite consensus disorder prediction 145 172 - -
Cma13g01075 172 Gene3D - 55 172 IPR012677 -
Cma13g01075 172 CDD RRM_HP0827_like 66 141 - -
Cma13g01075 172 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 26 168 - -
Cma13g01075 172 SUPERFAMILY RNA-binding domain, RBD 59 171 IPR035979 GO:0003676
Cma13g01075 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01075 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 - cpep:111782480 226.868
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01162 Cma-Chr1:8472072 Cma13g01075 Cma-Chr13:8119493 3.19E-22 dispersed
Cma09g00914 Cma-Chr9:4556959 Cma13g01075 Cma-Chr13:8119493 2.72E-19 dispersed
Cma13g01075 Cma-Chr13:8119493 Cma18g00006 Cma-Chr18:21157 1.15E-68 dispersed
Cma14g00330 Cma-Chr14:1459511 Cma13g01075 Cma-Chr13:8119493 1.24E-09 dispersed
Cma05g01318 Cma-Chr5:9976007 Cma13g01075 Cma-Chr13:8119493 4.67E-14 transposed
Cma20g01016 Cma-Chr20:6816837 Cma13g01075 Cma-Chr13:8119493 6.91E-88 transposed
Cma10g00295 Cma-Chr10:1336031 Cma13g01075 Cma-Chr13:8119493 6.28E-51 wgd
Cma11g00206 Cma-Chr11:1041250 Cma13g01075 Cma-Chr13:8119493 6.03E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g657 Blo04g00789 Blo16g00169 Bda06g00522 Bda15g00622 . Bpe13g00312 Bma06g00152 Bma12g00965 Cmo13g01121 . . . . . Sed08g0275 Cpe20g00073 Cpe04g01460 Bhi02g00095 Tan09g2044 Cmetu02g1487 . Hepe09g0273 . . Cla06g01539 Cam06g1698 Cec06g1760 Cco06g1759 Clacu06g1665 Cmu06g1611 Cre06g2424 Cone2ag0802 Cone16ag0207 Cone13ag0035 Cone19ag0044 Lsi02g00118 Csa01g00598 Chy12g01500 Cme12g01944 . Blo15g00338 Bda11g01723 Bda14g00879 Bpe07g00756 Bpe15g00581 Bma03g00850 . Sed08g2119 . Cmo11g00211 Cma13g01075 . Car13g00911 Car18g00005 . Cpe18g00707 Bhi08g01085 Tan05g2363 Cmetu12g0852 Lac10g0147 Hepe07g2465 . . Cla04g01155 Cam04g1213 Cec01g1724 Cco01g1769 Clacu04g1240 Cmu04g1219 Cre01g1515 Lsi06g01412 Csa01g00294 Chy02g02442 Cme02g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01075 Cma_Chr13 FPKM 120.50425 123.223091 54.026405 59.050911 146.195831 128.308624 143.528229 81.743942 83.199677 85.969376