Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01076 ATGGATTTGTGGATTGTTGCAGCAGCTACTGGTGCTGGATACGTAGCTAAGTACTGGAAGAATCAATCAAAGGATGGGGATTGTTCTTTATCACAGTTATCCTTTGGGGATTCCAATTTGGCGAGTCCTCAATACTCATATCATTTGCTTAGCAAATTTTCACAAAGGAAGAAACGATATGAAGATGTTTTTGGGCATGGAGGAATGGAAGGAACATCTTCAGATCAGAACCCATCAGACATTGCTTCAGTTGCAGAGCTGGCCTGCATAAGTGGAGGATTTGAAATTGGAAAGCTCGGACTTTTTGGGAGTCACCAAGATTCCAATGTGTTCTCTACACCAAATATGACTTTGAACTCTGAAGAACGGGTCGGGGAAAGCAGCAAAAGCAACACGATGGCTAATAACATTGAAATCTTAGTTTGCAATTCTTCTGGAAGGACAGCCTCTTCAAGAAACAGAAGCACAGCTAAAGGTAGATACTTGCATGGGGATCTTATCAAACCTCTGACTTATGAAGAAGATTGCCTTCCAGCCCATCAGAGTTCTTTGAGTCCATGCATTGCTGTGGAACTGGAGGAACATAAGCTACCCAAGGGATCACATTTTGATGCTGATGAAAGTGTATGTGCGGTTTCTCAACTGCCATTTGGGCCTCTGTCTGATAAAGTAAGTAATAAGAAGACAGGAAAGGAATGGGAAAGAAAGTCGAGAAGTTCCAACAAAATGGCCAACAGGGAACACTTCGATTCTAAAGATCTTCAAGAGGAACTTGAAATGAAGGACTCATTAACGCTTAAGGAGCTCAGTAATGACACTTATAGTAATGGCTTCTCTGAGAAAACAGTGGATGAATCTTCTCCAAAACATGTCATGGATTACACAGTAAACTTCAATGCTGAAGAGCTATACAAGCATATGGCAGAGCAAAGTTCTGAATCAATCCACAGAATTGAGGCCGAACTGGAAGCGGAACTCGAGAGGTTAGGATTAAATATAAGCACCGAAGGCACAGAGAGCTATCCCGACGATGACGATGAGCTTGGCCCAGAATTTGAAGAAGATTTTGCAAAAGGTGAGTTGAGGAATGACATGTTGAGTGGAGAAAATTGTGGGTGGAGCAAGGCTAATAAAGAAGCATGCGACTCAACCGTTCACTCTGGAAACTATACAGTGTCACCAAGGGAACTCAGCTTGCGTTTGCACGATGTTATTCAGTCGAGACTTGAAGCACGTATCAAGGAGCTTGAAAATGCCCTTCAAAATAACCACAAGAAGCAGCAGCTTCTTAATACAGAAGACAAGAGTTCTTGGCTTGAATAA 1323 42.25 MDLWIVAAATGAGYVAKYWKNQSKDGDCSLSQLSFGDSNLASPQYSYHLLSKFSQRKKRYEDVFGHGGMEGTSSDQNPSDIASVAELACISGGFEIGKLGLFGSHQDSNVFSTPNMTLNSEERVGESSKSNTMANNIEILVCNSSGRTASSRNRSTAKGRYLHGDLIKPLTYEEDCLPAHQSSLSPCIAVELEEHKLPKGSHFDADESVCAVSQLPFGPLSDKVSNKKTGKEWERKSRSSNKMANREHFDSKDLQEELEMKDSLTLKELSNDTYSNGFSEKTVDESSPKHVMDYTVNFNAEELYKHMAEQSSESIHRIEAELEAELERLGLNISTEGTESYPDDDDELGPEFEEDFAKGELRNDMLSGENCGWSKANKEACDSTVHSGNYTVSPRELSLRLHDVIQSRLEARIKELENALQNNHKKQQLLNTEDKSSWLE 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8122070 8124153 - CmaCh13G010760.1 Cma13g01076 306903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01076 440 MobiDBLite consensus disorder prediction 225 256 - -
Cma13g01076 440 Coils Coil 406 433 - -
Cma13g01076 440 PANTHER EMB|CAB62613.1 1 180 IPR040348 GO:0008356
Cma13g01076 440 PANTHER EMB|CAB62613.1 252 439 IPR040348 GO:0008356
Cma13g01076 440 MobiDBLite consensus disorder prediction 221 256 - -
Cma13g01076 440 Coils Coil 308 328 - -
Cma13g01076 440 PANTHER EMB|CAB62613.1 1 180 - -
Cma13g01076 440 PANTHER EMB|CAB62613.1 252 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01076 - - - mcha:111009000 551.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01076 Cma-Chr13:8122070 Cma01g01663 Cma-Chr1:11379497 8.71E-06 dispersed
Cma10g00297 Cma-Chr10:1339310 Cma13g01076 Cma-Chr13:8122070 5.83E-25 wgd
Cma11g00205 Cma-Chr11:1037395 Cma13g01076 Cma-Chr13:8122070 5.78E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g656 . . . . . Bpe13g00311 Bma06g00153 . Cmo13g01122 . . . . Car11g00185 Sed08g0274 Cpe20g00072 Cpe04g01461 Bhi02g00096 Tan09g2045 Cmetu02g1859 . Hepe09g0272 . . Cla06g01540 Cam06g1699 Cec06g1761 Cco06g1760 Clacu06g1666 Cmu06g1612 Cre06g2425 . . Cone13ag0036 Cone19ag0045 . Csa01g00597 Chy12g01501 Cme12g01945 . . Bda11g01722 Bda14g00878 . Bpe15g00582 . . Sed01g2298 . Cmo11g00210 Cma13g01076 . Car13g00912 . . Cpe18g00705 Bhi08g01086 Tan05g2364 Cmetu12g0950 Lac10g0146 Hepe07g2466 . . Cla04g01156 Cam04g1214 Cec01g1725 Cco01g1770 Clacu04g1241 Cmu04g1220 Cre01g1516 Lsi06g01413 Csa01g00293 . Cme02g01830
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014191 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01076 Cma_Chr13 FPKM 0.0 0.0 0.657444 0.558309 1.061528 1.155336 0.80539 0.0 0.0 0.290237