Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01077 ATGGCGGTTGGCTGGCTGCTTGGCACTTTTCCTATCAGATTTGTTTTAGTAAAGAACCATTTCCATATTGAGAACAATTTGTACGTGTTTAGTGCTTCTACTTCTCTAGATCACTTCTGTTACGTTTGTGGTGATGTTGGTTATGCAGAGCTGATTATAACCTGCTCCAAGTGCAAAGTTGTTCGTGAACATCTTTATTGTATGTCCAATAAAAGTGGCAATGTCCCCAAATCCTGGCTTTGTGGTAATTGTACATTAGACGAGGCCAAAAGTCCTGATGATTCAGGATCTCTGGTTCAACCTAAAATGCCAAGACATGCTAAAACTGGCAAAGTGAAGTTCTTACCTACTGAAGAAGTAAGGAAGCTATCATCAGGAGATATGAAGGGACCTTCAAAATTGAACGCAGCTTTTGGACCCCAAAGAACATTTAAGTCCAGAAAATGCTTTGAAAGCTCTATCCCCCGACCACATTTCCAAGCATCAAAAGAATCTCAAGAACGAAGTTCTGCTACGGTGCCTCCAACGATATGTGGTGTGAAGAAACAAGCATTAGCTACTTGTTTACCTTCAATGCCAGTAGACCCAGTACAAACATTAAAAAAGGCGAAGGTGAAGGTTACAGATATACCTGCTAAAGCTTCTTCCGTGTCAAGGCATGGTTTTCCTGTCACAAAAACAGGAAAAGAAGTTCCTTCTCCTTCCACTAAGTTAGAGGATATGCAAAAACAAAGGAAGAATGCTTCGTTGACCCAGGAAATACATGCATGCCGTGGCAACAAAGGAAAAGAAGTTCCTTCACCTCTCACTAAGTTGGACGATACGCAAAAACAAATGAAGTATGCTTTGATGACACAGGAAATACATGCTTACCGTGACTGCCTCCCATCATTACACGCCTCTTGGAAAGCTTATGAATTGTCGAGGAAGATTCCTCCCATTCTTCAAGTGAAGCTTCTTAGTCGTTCTGATATTTGGGATGAGCTGTTTCACGATGAATGTCCGGATCTTGCTGATATTGCTTTGTACTTCTTTCCCGCCGACAATTTTGAAAGGTCCAGAAAGAACAACTCTTACCTGTTTGAACTTATGGAGAGAGAAGATCTATTGATAAGAAGTCTTATTGACGGTGCTGAGTTGGTCGTATTTACTTATAGACAGCTGGATCTCCACTCACAGCATCTTAATATGCTAAGTGCTAAATGCCTCCTTTTCGGAGTCTTCCGTGCTATCAAGAAAGACAAGTCTCTTGTTCCTATGTTAGAATATGGTTCTGCAGTTTCTTCTGTAGAAAGTGAGTCCAAAGTTCCCCTGCTGGAATTCACGCCTAAAGGACATGGAAAGCACGATGAAGACAATGCTGTTAAAAGGGTAATTGACATAACGGGTGGAAACACTACTGGAAAGTCTCCAACTGCAAAGGATGTAGACTCTACCATTCGGCGATTACTATTAGAATTTGGGTCACAAAAACCCAGGGAGTCCGATGTCAATGCATTAACTACGATTGCTCAAATAAAAGATCAGGAACCTGCTCCAATCGCAGCCACTGGCTTGTATTCTCTTTCCCAGTCAAAAGGATTAAAAAGGAGCGTCGTTAGTTCTGAGGTGAATGAAGCAACTTGGCTGTTTAAGCCATTCAAGTTTGAATTGAACTTACCCTGTGTTAGTTCTTCTGTTGAAGACCAACAAATGTGCCGTACTCATATTCACCGACCACTGGAAGTGGAGAAGAATGCATATGATACATTTACAAAAACTGTAAATATTGACCTCGCCTCCGCTCGATGCGAAAAACTCTCAAAACTGAGTGAGAAGCGTTTGAGTTCGCTGCTATTGAAAAGAAGAAGAAACCCTTTCGAAGAAATGGCCATGGCAGCTCTAAGACGTGAGGGGAGGCGGTTCGCTACCGTGATCTCTTCTCAACCAATCACCGCTCTCCGGTCTTCCCTCGTTTGCGAGGAACAAGCTCCTCTTGGTGTGCGCTCTATCTCCACTCAAGTGGTTAGAAATCGAATGAAGAGTGTGAAAAATATCCAGAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTTCGGGCAATTCAAGTGCGTGCTGAAAATTCTCGTGGCCTTTGGCAACCCTTTACTGCACTTCTTGGGGATATTCCAAGTGTTGATGTAAAGAAGAATGTCATTGTTACCATTTCTTCTGACAAAGGTCTTTGTGGTGGAATTAATTCTACCTCTGTCAAGATAAGCAAGGCTCTGCGCAAGATAAATTCTGGTCCTGAACAGGAAACAAAATATGCTATATTGGGAGAGAAGGCAAAGGCTCAGTTAGTACGTGACTCCAAGAAGGACATAGAAGTCATCATCACTGAGCTGCAGAAGAATCCTTTAAATTATACTCAAGTCTCTGTTTTAGCTGATGATATTCTAAAGAACGTAGAATATGATGCTCTGAGGATTGTTTTCAACAAGTTCCAGTCAGTTGTCTCATTTCTGCCTACAGTATCTACCGTGCTGTCCCCTGAGATTGTTGAAAGGGAGGCAGAATCTGGGGGGAGGCTTGGTGACCTGGATTTATATGAGATTGAAGGTGGCGAGACAAAGTCTGAGGTTCTCCAAAACCTAGCAGAATTCCAGTTTTCTTGTGTACTGTTCAACGCCGTATTGGAAAATGCTTGCAGTGAACAAGGTGCAAGGATGTCTGCAATGGACAGCTCAAGCAGAAATGCTGGGGACATGCTTGATCGCCTCACATTAACTTATAACAGAACTCGGCAAGCATCTATCACCACCGAGTTGATTGAAATTATATCTGGAGCTTCAGCATTGGAGGGCTAG 2835 42.47 MAVGWLLGTFPIRFVLVKNHFHIENNLYVFSASTSLDHFCYVCGDVGYAELIITCSKCKVVREHLYCMSNKSGNVPKSWLCGNCTLDEAKSPDDSGSLVQPKMPRHAKTGKVKFLPTEEVRKLSSGDMKGPSKLNAAFGPQRTFKSRKCFESSIPRPHFQASKESQERSSATVPPTICGVKKQALATCLPSMPVDPVQTLKKAKVKVTDIPAKASSVSRHGFPVTKTGKEVPSPSTKLEDMQKQRKNASLTQEIHACRGNKGKEVPSPLTKLDDTQKQMKYALMTQEIHAYRDCLPSLHASWKAYELSRKIPPILQVKLLSRSDIWDELFHDECPDLADIALYFFPADNFERSRKNNSYLFELMEREDLLIRSLIDGAELVVFTYRQLDLHSQHLNMLSAKCLLFGVFRAIKKDKSLVPMLEYGSAVSSVESESKVPLLEFTPKGHGKHDEDNAVKRVIDITGGNTTGKSPTAKDVDSTIRRLLLEFGSQKPRESDVNALTTIAQIKDQEPAPIAATGLYSLSQSKGLKRSVVSSEVNEATWLFKPFKFELNLPCVSSSVEDQQMCRTHIHRPLEVEKNAYDTFTKTVNIDLASARCEKLSKLSEKRLSSLLLKRRRNPFEEMAMAALRREGRRFATVISSQPITALRSSLVCEEQAPLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQVRAENSRGLWQPFTALLGDIPSVDVKKNVIVTISSDKGLCGGINSTSVKISKALRKINSGPEQETKYAILGEKAKAQLVRDSKKDIEVIITELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFQSVVSFLPTVSTVLSPEIVEREAESGGRLGDLDLYEIEGGETKSEVLQNLAEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8124681 8135798 - CmaCh13G010770.1 Cma13g01077 306904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01077 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Cma13g01077 944 SUPERFAMILY FYVE/PHD zinc finger 31 87 IPR011011 -
Cma13g01077 944 SMART PHD_3 39 85 IPR001965 -
Cma13g01077 944 CDD F1-ATPase_gamma 665 939 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 PANTHER ATP SYNTHASE GAMMA CHAIN 623 943 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 666 942 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 Pfam ATP synthase 667 942 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 PANTHER BNAA05G10580D PROTEIN 623 943 - -
Cma13g01077 944 Hamap ATP synthase gamma chain [atpG]. 663 942 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 PRINTS ATP synthase gamma subunit signature 889 908 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 PRINTS ATP synthase gamma subunit signature 815 832 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 PRINTS ATP synthase gamma subunit signature 723 742 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 PRINTS ATP synthase gamma subunit signature 920 941 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g01077 944 Gene3D - 689 901 - -
Cma13g01077 944 ProSitePatterns ATP synthase gamma subunit signature. 928 941 IPR023632 -
Cma13g01077 944 Gene3D ATP synthase, gamma subunit, helix hairpin domain 669 939 - -
Cma13g01077 944 MobiDBLite consensus disorder prediction 218 240 - -
Cma13g01077 944 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 665 942 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01077 K02136 ATPeF1G, ATP5C1, ATP3; F-type H+-transporting ATPase subunit gamma - cpep:111783448 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00740 Cma-Chr13:6538101 Cma13g01077 Cma-Chr13:8124681 3.44E-27 dispersed
Cma13g01077 Cma-Chr13:8124681 Cma20g00898 Cma-Chr20:4341097 5.54E-06 dispersed
Cma13g01077 Cma-Chr13:8124681 Cma16g00864 Cma-Chr16:5162871 3.04E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g654 . . Bda06g00524 Bda15g00621 Bpe12g00525 . . Bma12g00967 Cmo13g01124 . . . . . . Cpe20g00071 . . . . . . . . . . . . . . . Cone2ag0804 . . . Lsi02g00117 Csa01g00596 Chy12g01502 Cme12g01946 . Blo15g00334 . . . . . . Sed01g2299 . . Cma13g01077 . Car13g00913 . . . Bhi08g01087 Tan05g2365 Cmetu12g0105 Lac10g0145 Hepe07g2467 . . Cla04g01157 Cam04g1215 Cec01g1726 Cco01g1771 Clacu04g1242 Cmu04g1221 Cre01g1517 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008823 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01077 Cma_Chr13 FPKM 88.983238 103.318504 69.044594 71.843132 55.501072 47.629055 55.62265 58.820801 58.021801 58.129417