Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01078 ATGCCGGCTCCAGTGCTGGCGCCCCCAAAAACTCCGGTGGGAGATGCAGTATTGGGAAGGGAATTGGTAGTTGTGAGGGTCGATGGTGGTGGCCTTGTGACAGGCGATGTCATTCCCGGTACTAAACTCGAGAACAATTTTGGATTGGGTTCGGGTTTTGAAACAACGGAGCGTCAAGCAGAGAAGTTCGACAAGAAACACAGAACAGAGAAGTCCGACGAGAAACACAGAGCAGTGAAAATGTTGTTTCAGATTCCCCGATTGACCAGCTCCCTCAGGGAGCCATTCGATGTCGACCAGGCGTATCTCCATCGCAAGCTCCTTCTTCAGAATCGCAAACCGACCCATTCTGTAACTTCATCTGGCGAGTCAGAGCTTGCACGGAGGATAGTGTATCAATGGGATGAAGCATCCTTTGAAGTTCGACAAGCCTATAAGCAGTTCATTGCGGGAGTTGTTGGATTGGTGGACAGAGAAGTACCATCGGAGGAGCTTGGCGAGGTAGCGCTGACTATTTATCGCCTTTTTGGAGAGCAAAAAGAAGAGAATGATCTCAACTGGACTGCTAAAAACAAAGAAGAACTGCAAAAGCTTATTGGCCATGCAGTTTCAGATGCTAGGCTGCAGAAAGTTGTTTCTCTAGCTCAGAAACTATTTACTTTGCAGCCAAGGGATCATGCAACTACATTTCTGGCAGAGAAGCATGTTAATAAGGGTGACTCCGAAGTGGAGTTTGGCGCTGATCTTGTGTTTAGAGAACCTGCTAGGTTTATGGTGGATGTGTCACTAGAAAATTCAGATTTACTGAGCAAGGATTTTACTGCACCTACATTTTATGACAGACAACATGTGCATGATGATTCCATTAACTTTGATCTCTCTAATGAAAGAGGAAAGTTAAATTTGAGTTGGTTGAGGGATGCATGTGATGAGATAACCAGAAAAAGTACCTCACAACTTTCCACTGATGAACTTGCAATGGCTATTTGCCGAGTCCTTGATTCAGAAAAACCTGGCGAGGAGATAGCTGCAGATCTATTGGATCTTGTTGGTGATGGAGCATTTGAGTTTGTTCAAGATCTTATATCACACCGAAGGGAACTTGTAAATGATATTCATCACGGGTTAACAATAATAAAATCCGAAAAAACGAATTCAAGCTCTCAATCACGAATGCCTAGCTATGGAACTCAGGTTACTATTCAAACAGAGTCAGAAAGACAAATTGATAAGCTTCGACGTAAAGAGGAAAAGCGAAATAAACGAGGAATTGACTATGGTACTGATAGTGATTTCTCTGCTATAAGCTTTTCTTCTCTAGTTCAAGCAAGTCAAAGGAAAAGTCCATTTGACGATCTTATTGGTTCTGGTGAGGGCGCTAACTCCCTTACTGTTAGTGCCCTTCCTCAAGGAACACAAAGAAAGCATTTTAAGGGATATGAGGAGGTTATTATCCCCCCAATCCCAGCAGCACAAATGAAACCTGGAGAAAAGCTGATTGAAATAACGGAGTTGGATGATTTTGCTCAAGCTGCTTTTTGTGGATTCAAATACTTAAATCGTATACAGAGTCGCATTTTTGACACTGTTTATAACACCAATGAGAATATACTAGTCTGTGCTCCCACAGGAGCTGGGAAAACTAATATAGCCATGATCTCCATTCTCCACGAGATTTCACAGCATTTCAAGGATGGATATTTGCATAAAGATGAATTTAAGATAGTTTATGTTGCTCCTATGAAGGCGCTGGCTGCAGAGGTCACATCTACTTTTAGCCATCGCTTATCTCCCTTGAATGTTATTGTAAGAGAACTAACTGGAGACATGCAACTTTCGAAGAATGAACTTGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATAACTCGCAAAAGCAGCGATATGTCACTGTCGATGTTAGTCAAACTCTTAATTATTGATGAGGTACATCTTCTAAATGATGACCGAGGGCCTGTAATTGAGGCACTAGTTGCACGAACGCTTCGTCAGGTGGAGTCAACACAATCAATGATACGTATTGTTGGCCTTTCAGCCACCCTGCCTAACTACTTAGAGGTTGCACAGTTTCTTAGAGTGAGTCCTGGAACAGGACTTTTCTTCTTTGATTCTAGCTATCGTCCTGTGCCTCTTGCACAACAATATATTGGTATCAGCGAGCACAACTTTGCAGCTCGCAATGAATTGTTAAATGAAATATGCTATAAGAAGGTTGTTGATTCATTGAAGCATGGGCATCAAGCAATGGTGTTTGTTCATTCCCGAAAGGACACAGCAAAAACAGCTGAGAAATTGGTCGAACTTGGCCGAAAGTATGATGATCTTGAGCTATTTAAGAATGATGCGCACCCACAGTTTGGTATTATCAAGAAAGAAGTCATCAAATCCAGGAATAAAGATCTCGTAGAACTTTTTGATCATGGGATTGGTGTACATCATGCTGGAATGCTACGTTCTGATAGAGGTTTAACTGAAAAGCTTTTCTCTGATGGACTATTGAAGGTTCTTGTTTGTACAGCCACCTTAGCATGGGGTGTAAATCTTCCCGCTCATACGGTTGTTATAAAGGGCACCCAATTATATGATCCAAAAGCTGGTGGATGGCGAGATTTGGGTATGCTTGATGTCATGCAGATTTTTGGACGAGCTGGGAGACCTCAGTTTGACAAAAGTGGTGAAGGCATCATAATTACATCTCACGATAAACTTGCGCATTATTTGCGATTGCTCACAAGTCAGCTCCCTATAGAGAGTCAGTTTATTGGTTCCTTGAAAGATAATTTGAATGCGGAGGTTGCACTGGGTACTGTAACGAATGTAAAGGAAGCTTGTGCGTGGCTTGGATATACATATCTCTTTATAAGGATGAGACTAAATCCTCTGGCATATGGTATTGGATGGGATGAGGTCGTGGCCGATCCATCTTTGAGTTCAAAGCAAAGAGATCTCATAACAGATGCTGCACGTGCGCTTGACAAATCAAAGATGATGCGTTTTGATGAAAAAAGTGGCAACTTTTATTGTACAGAGCTGGGCCGCATTGCCAGCCACTTCTATATTCAGTATTCCAGTGTTGAGACGTATAACGAGATGTTGCGACGTCACATGAATGACAGTGAGATTATTGACATGGTTGCTCATTCTTCTGAGTTTGAAAATATTGTTGTTCGAGATGAGGAGCAGAGTGAGCTGGAGATGTCAGTACGAACATCATGTCCCTTAGAAGTTAAGGGTGGCCCATCAAATAAACATGGAAAAATTTCCATCCTTATTCAGTTGTACATTTCCAGAGGTTCCATCGATTCCTTCTCGCTAGTCTCTGATGCTGCTTATATAAGTGCTAGCTTGGCTCGAATTATGCGAGCTCTATTTGAAATATGTTTGAGAAGGGGTTGGTGTGAAATGACATTGTTCATGTTGGAATACTGCAAAGCTGTTGATCGTCGAATATGGCCACACCAACATCCTCTAAGACAATTTGACAAGGATCTTTCTTTAGATATATTGCGTAAGCTTGAGGAGCGAGAGGCCGACCTGGATCGTCTGCAAGAGATGCAGGAAAAAGACATAGGAGCACTGATCCGTTATGTACCTGGTGGAAGATTGGTTAAGCAGTATTTAGGATATTTTCCACTCATCCAGTTATCAGCAACTGTCAGTCCAATAACAAGAACAGTCCTAAAGGTTGAGGTGCTCATAACGGCCGATTTTACATGGAAAGATCGTTTTCATGGTGGTTCACAACGCTGGTGGATACTAGTTGAGGACACGGAGAATGACCACATCTATCACTCTGAACTTTTCACGCTGGCAAAGAAGAAAGTTAGAGAGCCTCAAAAGCTTTCCTTTACTGTCCCAATATTTGAGCCACATCCACCTCAATATTATATTCATGCCGTTTCTGACTCCTGGCTGCAAGCAGAAGCATTTTACACTATATCTTTCCAAAATTTAGCATTGCCGGAGGCCAGTACGTCGCACACTGAGCTCCTAGATTTGAAACCTCTTCCAATAACTGCCCTTGGTAACAGAAGTTACGAATCCTTGTATAAATTTTCACATTTTAATCCAATACAAACACAGATTTTTCATATGTTATATCATACAGATGATAACATTCTGTTGGGTGCTCCCACTGGGAGTGGAAAAACCATATCTGCTGAACTTGCTATGCTTCGCCTCTTCAATACTCAGCCTGATATGAAGGTTGTCTACATAGCACCTTTGAAGGCCATTGTTCGTGAAAGAATGAATGACTGGAAAAATTGTCTTGTTTCTCGGCTTCACAAAAAAATGGTTGAAATGACGGGAGATTATACCCCTGATTTGATGGCACTTTTGTCAGCTGATATTATAATATCAACCCCTGAAAAGTGGGATGGTATTAGTCGAAATTGGCATAGCCGAAGTTATGTTACAAAGGTTGGACTAATGATTTTGGATGAGATCCACTTATTGGGAGCAGATCGAGGACCCATTCTTGAGGTTATTGTTTCAAGGATGAGGTATATATCATCACAGACTGAGAGAAAAGTTAGATTTGTAGGCCTTTCAACTGCTTTAGCGAACGCAAGCAATTTGGGTGACTGGTTGGGTGTTGGAGAAAATGGACTTTTCAATTTCAAACCAAGCGTAAGGCCAGTGCCTCTTGAAGTTCATATCCAGGGATATCCTGGAAAGTTTTACTGCCCTAGGATGAACAGTATGAATAAACCAACTTATGCTGCCATCTGCACCCATTCCCCAACCAAGCCAGTTCTTATATTCGTCTCATCTCGTCGTCAGACAAGACTCACAGCATTGGATCTTATTCAGTTTGCAGCTTCAGATGAGCATCCAAGGCAATTTATTAATATGGCCGAAGAAGAGCTTCAGATGATCCTTTGTCAAGTTATTGATCAAAATCTCAGGCACACCTTGCAATTTGGTATCGGGCTACACCATGCAGGTCTAAATGATGGGGATAGGTCTATGGTTGAGGAGCTGTTTGCAAACAACAAAATTCAGGTATTGGTTTGTACTAGCACATTGGCTTGGGGTGTGAACCTTCCTGCACATCTAGTTATTATCAAGGGAACAGAATATTATGATGGAAAATCCAAGAGATACGTTGATTTTCCAATCACAGATATTCTGCAAATGATGGGTCGTGCAGGTCGACCACAGTATGATCAACATGGAAAAGCAGTTATTCTTGTTCATGAACCCAAAAAGAGCTTTTATAAAAAGTTTTTGTACGAACCATTCCCTGTTGAGAGCAGTCTGAAGGAGCAGTTGCATGACCATATCAATGCTGAGATAGTTTCGGGCACCATTTGTCATAAAGAGGATGCAGTGCACTATCTTACCTGGACATATTTGTTTCGTAGGCTGATGGTAAATCCTGCTTACTATGGACTTGATAGCATGGAACCTGAAACTCTAAGTTCGTACTTATCTAGTTTAGTACAAAGTACATTTGAGGATCTTGAGGATAGTGGATGCATAACGATGGATGAAAACAGTGTGGAGCCAACGATGCTGGGCTCAATAGCATCTCAGTATTACCTCAGCTACATTACTTTATCAATGTTTGGCTCAAATATAGGTCCAGATACGTCACTTGAAGTATTTTTGCATATCCTTTCTGCTGCCTCTGAATATGATGAGCTTCCTGTGCGGCATAATGAGGAAAATTACAATGCTGCTCTATCCGAGAGAGTTCGATATGCAGTGGACAAAGATCGACTTGATGATCCACATGTGAAGACAAATTTACTTTTTCAGGCACATTTTTCTCAGTTGGAATTACCAATCAGTGACTACATTACCGACTTAAAATCGGTGTTGGATCAAAGTATACGCATTATTCAGGCAATGATTGATATATGTGCCAACAGTGGATGGCTGTCAAGCTCGATTACTTGCATGCGTCTGTTGCAAATGGTCATGCAGGGCTTGTGGTTTGATGTAGATTCTGCATTGTGGATGCTGCCATGCATGAACGATGACCTTGCAAGTTCACTTAAAAAATCGGGATATCTTACTCTGCAGCAACTGTTGGATCTTCATAAGACAACTTTGCAAAATTTGATTGGAAACTTTCCTGCAGCAAAATTATCTCAGGATTTGCAGAATTTTCCTCGTGTCCAAATGAAGATAAAACTTCAAAGGAGGGATGAGGACGTTGAAAAACCTCCCTCTCTTCACATAAGACTGGAGAAGATAAGTTCGAGGAAAAACCGATCCAGGGCATATGCACCACGCTTTCCCAAGATAAAAGATGAAGCATGGTGGCTCATACTTGGTAACACCTCTACGTCGGAACTGTATGCTATAAAGAGAGTTTCTTTCTCTGATCGCCTGGTCACAACCATGCAGTTGCCTCCAAAAAGAACTGATTTCCAGGAAATGAATGATAAGTGGAAGCAGTTGATCCAATTACGACCTTTTCAGTATCCAAAGCTAAGTCCAATGGCCTGGACTTGA 6501 41.73 MPAPVLAPPKTPVGDAVLGRELVVVRVDGGGLVTGDVIPGTKLENNFGLGSGFETTERQAEKFDKKHRTEKSDEKHRAVKMLFQIPRLTSSLREPFDVDQAYLHRKLLLQNRKPTHSVTSSGESELARRIVYQWDEASFEVRQAYKQFIAGVVGLVDREVPSEELGEVALTIYRLFGEQKEENDLNWTAKNKEELQKLIGHAVSDARLQKVVSLAQKLFTLQPRDHATTFLAEKHVNKGDSEVEFGADLVFREPARFMVDVSLENSDLLSKDFTAPTFYDRQHVHDDSINFDLSNERGKLNLSWLRDACDEITRKSTSQLSTDELAMAICRVLDSEKPGEEIAADLLDLVGDGAFEFVQDLISHRRELVNDIHHGLTIIKSEKTNSSSQSRMPSYGTQVTIQTESERQIDKLRRKEEKRNKRGIDYGTDSDFSAISFSSLVQASQRKSPFDDLIGSGEGANSLTVSALPQGTQRKHFKGYEEVIIPPIPAAQMKPGEKLIEITELDDFAQAAFCGFKYLNRIQSRIFDTVYNTNENILVCAPTGAGKTNIAMISILHEISQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNVIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQSMIRIVGLSATLPNYLEVAQFLRVSPGTGLFFFDSSYRPVPLAQQYIGISEHNFAARNELLNEICYKKVVDSLKHGHQAMVFVHSRKDTAKTAEKLVELGRKYDDLELFKNDAHPQFGIIKKEVIKSRNKDLVELFDHGIGVHHAGMLRSDRGLTEKLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAHYLRLLTSQLPIESQFIGSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIGWDEVVADPSLSSKQRDLITDAARALDKSKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEIIDMVAHSSEFENIVVRDEEQSELEMSVRTSCPLEVKGGPSNKHGKISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMTLFMLEYCKAVDRRIWPHQHPLRQFDKDLSLDILRKLEEREADLDRLQEMQEKDIGALIRYVPGGRLVKQYLGYFPLIQLSATVSPITRTVLKVEVLITADFTWKDRFHGGSQRWWILVEDTENDHIYHSELFTLAKKKVREPQKLSFTVPIFEPHPPQYYIHAVSDSWLQAEAFYTISFQNLALPEASTSHTELLDLKPLPITALGNRSYESLYKFSHFNPIQTQIFHMLYHTDDNILLGAPTGSGKTISAELAMLRLFNTQPDMKVVYIAPLKAIVRERMNDWKNCLVSRLHKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERKVRFVGLSTALANASNLGDWLGVGENGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFINMAEEELQMILCQVIDQNLRHTLQFGIGLHHAGLNDGDRSMVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEQLHDHINAEIVSGTICHKEDAVHYLTWTYLFRRLMVNPAYYGLDSMEPETLSSYLSSLVQSTFEDLEDSGCITMDENSVEPTMLGSIASQYYLSYITLSMFGSNIGPDTSLEVFLHILSAASEYDELPVRHNEENYNAALSERVRYAVDKDRLDDPHVKTNLLFQAHFSQLELPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMVMQGLWFDVDSALWMLPCMNDDLASSLKKSGYLTLQQLLDLHKTTLQNLIGNFPAAKLSQDLQNFPRVQMKIKLQRRDEDVEKPPSLHIRLEKISSRKNRSRAYAPRFPKIKDEAWWLILGNTSTSELYAIKRVSFSDRLVTTMQLPPKRTDFQEMNDKWKQLIQLRPFQYPKLSPMAWT 2166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8137463 8161341 + CmaCh13G010780.1 Cma13g01078 306905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01078 2166 SUPERFAMILY Sec63 N-terminal domain-like 1047 1222 - -
Cma13g01078 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1552 1761 IPR027417 -
Cma13g01078 2166 Pfam DEAD/DEAH box helicase 521 694 IPR011545 GO:0003676|GO:0005524
Cma13g01078 2166 Gene3D - 1763 1855 IPR036388 -
Cma13g01078 2166 CDD SF2_C_Ski2 718 909 - -
Cma13g01078 2166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 710 IPR014001 -
Cma13g01078 2166 Gene3D C2 domain 2050 2145 IPR035892 -
Cma13g01078 2166 Gene3D - 1330 1557 IPR027417 -
Cma13g01078 2166 MobiDBLite consensus disorder prediction 406 424 - -
Cma13g01078 2166 PIRSF BRR2 56 2142 - -
Cma13g01078 2166 Gene3D C2 domain 1221 1329 IPR035892 -
Cma13g01078 2166 SUPERFAMILY Sec63 N-terminal domain-like 1882 2040 - -
Cma13g01078 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 926 IPR027417 -
Cma13g01078 2166 Pfam Helicase conserved C-terminal domain 751 896 IPR001650 -
Cma13g01078 2166 Pfam Helicase conserved C-terminal domain 1633 1731 IPR001650 -
Cma13g01078 2166 Gene3D - 1164 1218 - -
Cma13g01078 2166 Gene3D - 1558 1762 IPR027417 -
Cma13g01078 2166 Pfam DEAD/DEAH box helicase 1368 1533 IPR011545 GO:0003676|GO:0005524
Cma13g01078 2166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 745 943 IPR001650 -
Cma13g01078 2166 SMART Sec63_2 1019 1326 IPR004179 -
Cma13g01078 2166 SMART Sec63_2 1849 2157 IPR004179 -
Cma13g01078 2166 MobiDBLite consensus disorder prediction 383 424 - -
Cma13g01078 2166 Pfam Sec63 Brl domain 1019 1325 IPR004179 -
Cma13g01078 2166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1604 1790 IPR001650 -
Cma13g01078 2166 SMART ultradead3 515 726 IPR014001 -
Cma13g01078 2166 SMART ultradead3 1362 1566 IPR014001 -
Cma13g01078 2166 CDD DEXHc_ASCC3_2 1365 1553 - -
Cma13g01078 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1253 1550 IPR027417 -
Cma13g01078 2166 SUPERFAMILY E set domains 2036 2134 IPR014756 -
Cma13g01078 2166 MobiDBLite consensus disorder prediction 383 405 - -
Cma13g01078 2166 SUPERFAMILY Winged helix DNA-binding domain 1761 1861 IPR036390 -
Cma13g01078 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 703 IPR027417 -
Cma13g01078 2166 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 508 548 - -
Cma13g01078 2166 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 549 2135 - -
Cma13g01078 2166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1375 1550 IPR014001 -
Cma13g01078 2166 PANTHER SEC63 DOMAIN-CONTAINING 508 548 - -
Cma13g01078 2166 PANTHER SEC63 DOMAIN-CONTAINING 549 2135 - -
Cma13g01078 2166 Gene3D - 507 718 IPR027417 -
Cma13g01078 2166 SUPERFAMILY Winged helix DNA-binding domain 926 1031 IPR036390 -
Cma13g01078 2166 CDD SF2_C_Ski2 1557 1745 - -
Cma13g01078 2166 CDD DEXHc_ASCC3_1 519 714 - -
Cma13g01078 2166 Pfam Sec63 Brl domain 1849 2128 IPR004179 -
Cma13g01078 2166 Gene3D - 1856 1992 - -
Cma13g01078 2166 Coils Coil 1180 1200 - -
Cma13g01078 2166 Gene3D - 719 921 IPR027417 -
Cma13g01078 2166 SMART AAA_5 533 877 IPR003593 -
Cma13g01078 2166 SMART AAA_5 1380 1530 IPR003593 -
Cma13g01078 2166 Gene3D - 1020 1162 - -
Cma13g01078 2166 SMART helicmild6 1641 1733 IPR001650 -
Cma13g01078 2166 SMART helicmild6 806 898 IPR001650 -
Cma13g01078 2166 Gene3D - 928 1018 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01078 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4] - csv:101222457 3904.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02050 Cma-Chr1:13012098 Cma13g01078 Cma-Chr13:8137463 3.43E-94 dispersed
Cma04g02693 Cma-Chr4:18229501 Cma13g01078 Cma-Chr13:8137463 1.65E-79 dispersed
Cma05g00606 Cma-Chr5:3036784 Cma13g01078 Cma-Chr13:8137463 1.52E-28 dispersed
Cma13g01078 Cma-Chr13:8137463 Cma17g00475 Cma-Chr17:2894320 8.52E-22 dispersed
Cma13g01078 Cma-Chr13:8137463 Cma18g01277 Cma-Chr18:9896245 2.64E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g647 . Blo16g00171 . . . Bpe13g00309 Bma06g00154 . Cmo13g01125 . . . . . . Cpe20g00069 . . . . . . . . . . . . . . . Cone2ag0807 . . . Lsi02g00115 Csa01g00593 Chy12g01505 Cme12g01949 . . Bda11g01720 . . . . . . . . Cma13g01078 . Car13g00915 . . . Bhi08g01095 . . . . . . Cla04g01159 Cam04g1218 Cec01g1729 Cco01g1775 Clacu04g1245 Cmu04g1224 Cre01g1520 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009577 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01078 Cma_Chr13 FPKM 12.395939 14.019331 17.123789 16.27849 11.252666 12.167967 12.673378 27.293604 22.941305 25.548529