Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01080 ATGCCTCCATTTTCATTCCATAAGAACGCCATGCCTCCACTATTATTTTTGTTGGCGGATATGAATCCTGATAAATTCACCCACAAGACTAACGAGGCACTTGCCGGAGCTCATGAATTGGCATTGAATTCCGGCCATGCTCAACTGACACCGCTCCATTTGGCGGTTGCTTTAATTTCTGATCCGAGTGGGATCTTGAGCCAAGCGATTGCTAGTTCCGGCGGCGACAATGCCCAAAAAGAAGTGGACACGGTTTTCAAGCGGGCGTTGAAGAAGCTCCCATCTCAATCCCCTGCACCTGATGTAGTACCGGCGAGTACGACTCTGATTAAGGTAATCCGAAGGGCACAAGCAGCGCAAAAAACACGAGGAGACACGCATTTAGCTGTCGATCAACTAGTTCTTGGTCTTCTTGAGGATTCTCAGATTGGGGATTTGCTTAAAGAAGCTGGTATCACCACTGCAAAAGTTAAGTCCGAGGTCGAGAAACTCCGTGGAAAAGAAGGGAAGAAAGTGGAGAGTGCATCTGGAGACTCAACATTTCAGGCACTCAAAACCTATGGGCGAGACCTGGTAGAACAAGCGGGGAAACTCGACCCAGTTATTGGCCGGGACGAGGAAATTCGTAGAGTGGTGAGGATTTTATCGAGAAGAACTAAGAACAACCCAGTTCTTATTGGTGAGCCTGGCGTTGGTAAAACTGCAGTGGTTGAAGGATTAGCGCATAGAATCGTAAGAGGAGATGTACCGAGTAATCTGGCTGATGTGAGGCTCATAGCTTTGGATATGGGCGCTTTGGTTGCGGGGACCAAGTACAGGGGAGAATTTGAAGAGAGGTTGAAGGCTGTATTGAAGGAAGTTGAAGATGCTGAAGGGAAGGTCATATTGTTTATTGATGAGATTCATCTTGTTCTTGGTGCTGGAAGAACTGAAGGGTCTATGGATGCTGCTAACCTCTTCAAGCCTATGCTGGCTAGAGGGCAGCTTCGTTGCATTGGGGCAACTACCCTTGAAGAGTACAGAAAGTACGTAGAGAAGGATGCGGCATTTGAGAGGCGGTTTCAACAGGTTTATGTGGCTGAACCGAGCGTGCCTGACACTATCAGCATCCTGCGAGGCCTGAAAGAGAGATATGAAGGCCACCATGGTGTTAGGATACAAGATCGAGCTCTTGTTGTCGCTGCCCAGCTTTCGAGTCGATATATCACTGGACGGCACCTTCCTGATAAGGCTATTGATTTAGTTGATGAAGCTTGTGCTAATGTGAGGGTCCAGCTTGATAGTCAGCCTGAAGAGATTGACAACTTGGAGAGGAAGCGAATGCAGCTTGAAGTTGAACTTCATGCTCTTGAGAAGGAGAAGGATAAAGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGACGATTTGAGGGATAAGCTTCAGCCTTTGTTGATGAAATATCGCAAGGAGAAGGAAAGAATCGATGAGATTAGAAGACTGAAGCAGAAGAGGGAGGAGCTACAAATAGCTTTGCAAGAGGCTGAAAGAAGATACGATTTGGCAAGAGCTGCTGATTTGCGATATGGAGCCATCCAGGAAATAGAATCTGCATTAGCACGGATTGAAGGGAACACTGATGAGAATCTAATGTTAACCGAAACCGTCAGACCGGAACAAGTTGCGGAAGTTGTGAGCCGGTGGACTGGAATACCTGTCACGAGGCTTGGCCAGAACGACAAAGAGAGGCTGGTTGGGCTTGCTGAAAGATTGCACAAGAGAGTTGTGGGACAGAACCAAGCAGTGGATGCTGTGGCCGAGGCTGTGCTACGATCAAGAGCTGGATTGGGGAGGCCACAGCAGCCAACTGGGTCGTTCCTGTTTCTGGGTCCAACCGGTGTAGGCAAAACTGAGCTTGCCAAGGCGCTTGCCGAGCAACTTTTTGATGATGAGAACCTCCTGGTGAGAATCGACATGTCTGAATATATGGAACAACACTCAGTTTCACGCCTCATTGGTGCTCCTCCTGGGTATGTTGGGCATGAGGAAGGAGGGCAACTCACAGAGGCTGTAAGGCGGAGGCCTTACAGTGTTGTTCTATTTGATGAAGTGGAGAAAGCTCACGTCTCTGTGTTCAACACTCTTCTCCAAGTTTTAGACGATGGAAGGCTGACCGATGGCCAAGGCCGCACTGTGGATTTCAGAAACACAGTCATTATCATGACCTCTAACATTGGAGCTGAATATCTCCTTTCTGGGCTGATGGGGAAGTGCACAATGCAAGTTGCTCGTGATCGAGTTATGGAAGGGGTGCGGAAACACTTCAGGCCAGAGCTGCTTAATCGCTTGGATGAAATTGTTGTATTTGATCCTCTCTCGCACGACCAGCTGAGGAAAGTTGCCAGATTGCAAATGAAAGATGTTGCAGCTCGCCTGGCTGAGAGGGGCGTTGCCTTGGGCGTTACCGATGCCGCTCTGGATTATGTCTTGGCAGAGAGCTACGATCCAGTGTATGGCGCGAGACCCATAAGAAGATGGCTGGAGAAGAGGGTGGTGACGGAGCTGTCGAGAATGTTGATCAAAGAAGAAATCGACGAGAATTCAACTGTGTTCATTGATGCAGCAGCAGATGGGGATGGCTTGTCGTACAGAGTGGAGAAGAATGGTGGATTTGTTGATGCAGCAACTGGCAAAAAGTCTGATGTTTTGATTCACATCAACAACGTCGTCCCAAGAAGCGAGGCTGCTCAGACTGTGAAGAAGATGAAGATTCAAGAAATTGATGAAGAAGATGAGATGGAAGATCGTTTTCCATCGGATTACAGCCTCCAGATTTGTGGGGATTCTAATTGGGGGATCGTCTTCTTTGCAATTCCGATCATTTGCTTCTAA 2877 48.04 MPPFSFHKNAMPPLLFLLADMNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALISDPSGILSQAIASSGGDNAQKEVDTVFKRALKKLPSQSPAPDVVPASTTLIKVIRRAQAAQKTRGDTHLAVDQLVLGLLEDSQIGDLLKEAGITTAKVKSEVEKLRGKEGKKVESASGDSTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAHRIVRGDVPSNLADVRLIALDMGALVAGTKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQKREELQIALQEAERRYDLARAADLRYGAIQEIESALARIEGNTDENLMLTETVRPEQVAEVVSRWTGIPVTRLGQNDKERLVGLAERLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHVSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNIGAEYLLSGLMGKCTMQVARDRVMEGVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAARLAERGVALGVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVFIDAAADGDGLSYRVEKNGGFVDAATGKKSDVLIHINNVVPRSEAAQTVKKMKIQEIDEEDEMEDRFPSDYSLQICGDSNWGIVFFAIPIICF 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8164516 8168723 - CmaCh13G010800.1 Cma13g01080 306907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01080 958 Coils Coil 483 520 - -
Cma13g01080 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 565 IPR027417 -
Cma13g01080 958 Coils Coil 426 475 - -
Cma13g01080 958 Pfam ATPase family associated with various cellular activities (AAA) 224 337 IPR003959 GO:0005524|GO:0016887
Cma13g01080 958 ProSitePatterns Chaperonins clpA/B signature 2. 651 669 IPR028299 -
Cma13g01080 958 Gene3D - 787 885 - -
Cma13g01080 958 CDD AAA 591 786 - -
Cma13g01080 958 SUPERFAMILY Double Clp-N motif 24 178 IPR036628 -
Cma13g01080 958 PANTHER ATP-DEPENDENT CLP PROTEASE 24 881 - -
Cma13g01080 958 ProSiteProfiles Clp repeat (R) domain profile. 23 167 IPR004176 -
Cma13g01080 958 Gene3D - 570 786 IPR027417 -
Cma13g01080 958 SMART AAA_5 617 761 IPR003593 -
Cma13g01080 958 SMART AAA_5 219 364 IPR003593 -
Cma13g01080 958 Coils Coil 273 293 - -
Cma13g01080 958 Pfam C-terminal, D2-small domain, of ClpB protein 787 866 IPR019489 -
Cma13g01080 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 867 IPR027417 -
Cma13g01080 958 Gene3D - 364 564 IPR027417 -
Cma13g01080 958 SMART ClpB_D2_small_2 787 878 IPR019489 -
Cma13g01080 958 Gene3D - 23 168 IPR036628 -
Cma13g01080 958 ProSitePatterns Chaperonins clpA/B signature 1. 315 327 IPR018368 GO:0005524
Cma13g01080 958 Pfam Clp amino terminal domain, pathogenicity island component 116 166 IPR004176 -
Cma13g01080 958 Pfam Clp amino terminal domain, pathogenicity island component 37 79 IPR004176 -
Cma13g01080 958 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 728 742 IPR001270 GO:0005524
Cma13g01080 958 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 666 684 IPR001270 GO:0005524
Cma13g01080 958 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 695 713 IPR001270 GO:0005524
Cma13g01080 958 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 621 639 IPR001270 GO:0005524
Cma13g01080 958 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 24 881 - -
Cma13g01080 958 Pfam AAA domain (Cdc48 subfamily) 617 781 IPR003959 GO:0005524|GO:0016887
Cma13g01080 958 Gene3D - 170 363 IPR027417 -
Cma13g01080 958 CDD AAA 202 357 - -
Cma13g01080 958 Pfam AAA lid domain 364 463 IPR041546 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01080 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1652.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00416 Cma-Chr9:1786704 Cma13g01080 Cma-Chr13:8164516 0 dispersed
Cma13g00138 Cma-Chr13:964701 Cma13g01080 Cma-Chr13:8164516 0 dispersed
Cma13g01080 Cma-Chr13:8164516 Cma09g01047 Cma-Chr9:5438843 1.83E-165 dispersed
Cma01g00463 Cma-Chr1:2350331 Cma13g01080 Cma-Chr13:8164516 0 transposed
Cma01g00828 Cma-Chr1:4429684 Cma13g01080 Cma-Chr13:8164516 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01080 Cma_Chr13 FPKM 8.096281 9.218816 51.453712 53.918419 7.466984 8.294471 8.885116 192.548676 193.699432 178.987106