Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01081 ATGGGGGAGGAGAAGCGGCACCAGATGATGCAGAATCTCTTTGGAGATCAATCTGAGGAGGAAGAAGAGATTGATTCCGAGCATGAGTCCAATCCGCAACCCAATTATGCCTCTGATGAAGGGGAAGGAGAGGCGGAGCCTGAAGGTGAAGGTGAAGTGGAGGGACATGGGGAGGTGGAAATGGAGAGTGAAGGTGAGTTGCAGGATGTTGATCCGGATCCTGGAGAAAGTGAGGGTGAAAGGGATCAAAGTTCTCCAGAAGTGGGTGTGGATCACCGTAGAGAAGAAGAAAGTGAAGGGAAAGAGGTGGATAGCGACGATAGGGAAGAATATGGTCAAAGAGTGGTAACAAGCAGGAGGCATGATTTAGTTGGAAGTGAATCCGAGAGGTCGGAAGAAAACCATTATATTGACAACGAAGACGAAGAGGTGGATCAAACTAGGAGTCCAAGGGAGGAGAGGGATCACAGTTCACATCCAGTTGCTGAAATTCGCGATGTATTTGGTGACTCTGATGAGGAAGAGGAAGCAGAATATGCAGTTGAAAATGATATTAAGCAAGATTCTGCTAGGTCACCTATGGAAGAGGAGGAGAGCTTTGAGAAGAGTCCAAGACGAGATGATATAATTCCTGATGAAGATGCTCGGTATGATTCAGATGCTCGCTATGAATCAGAAGAGGAAAATTTTGAGGTAAAACATAAAGAGAAGCCAGTTGGGCCTCCATTGGAGCTAGAGATTCCATTACGTCCTCCTCCTGCTCGCCCAGAAAAGATGAACATGATAAAAGTTTCCAATATTATGGGCTTTGATCCAAAACCATTTGATCCCAAAACGTATGTGGAAGAGGATATATTTGTGGCAGATGAATCTGGAGCTAACAAACGCATACGCTTGGAAAATAACATCGTGCGCTGGAGGACTGTTAGGAAACCTGATGGCACAACAAGTTGTGAAAGCAATGCACGTTTTGTGAGGTGGTCAGATGGCAGTTTGCAACTGTTAATTGGGAATGAAGTGCTCGACATAAATGTGCAAGATGCAAAGCATGATCAAGCACACTTGTTTCTTCGGCATGGGAAGGGGATTTTGCAATCACAAGGTAGGCTTATGAGGAAGATGAGGTTCATTCCATCATCCCTGACATCAAATTCTCACCGCTTATTAACTGCTTTGGTTGACTCACGACATAAGAAGGTGTATAAGGTCAAGAATTGTATAACGGACATTGATCCTGAAAGGGAAAAGGAGGAAAAAGAAAGGGCTGAAAGTCAAACAATCAGGGCAAATGTGCTTCTTAATCGGAAAAAGGAAAAGGTTAACAAGAAATACACCCCTGTCATTGATAGAAGACGCCAACTATCACCTGGGTTCTTGGAAGATGCCCTTGAGGAGGAAGATGAAACAGATTATATTGATGCACGTCGTTCCCGTCGCCGCTTTGAGGAAGATTTGGAAGCTGAAGCCCGAGCAGAAAAACGAATTATGAATGCGAAGAAGGGAACTAGAGACATCCCCCGAAAGCCATCCTTGCCCGCTTCTAAATCATCTGGGCGTCCTGTGGATTTCTCAGACAGTGAGAGGGAAGAGTCTGAGTACGAAACTGAAGAAGAAGATGATGCTCATGGGAGAGTTGAAGAACCAGAGCAGGAGTATGAGGAAGAGGGGGAGGAAGATTATGAACGTGATGAGGAGGCAGAGGTTAATGAAGTTTCTGATGTGGATGAAGAGGCTGAGGAGCCCAAGCATAAAGTTAGAGATTATGGAGGCAGTCACAAGCGCAAGGGGATTGAGTCTGATGAGGAGTCTCCTCCAAGAAAAGTTGCAACCCATCGTAGGATGGCCGTAGTTTACGACAGCGATGATGAGTGA 1872 45.46 MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPQPNYASDEGEGEAEPEGEGEVEGHGEVEMESEGELQDVDPDPGESEGERDQSSPEVGVDHRREEESEGKEVDSDDREEYGQRVVTSRRHDLVGSESERSEENHYIDNEDEEVDQTRSPREERDHSSHPVAEIRDVFGDSDEEEEAEYAVENDIKQDSARSPMEEEESFEKSPRRDDIIPDEDARYDSDARYESEEENFEVKHKEKPVGPPLELEIPLRPPPARPEKMNMIKVSNIMGFDPKPFDPKTYVEEDIFVADESGANKRIRLENNIVRWRTVRKPDGTTSCESNARFVRWSDGSLQLLIGNEVLDINVQDAKHDQAHLFLRHGKGILQSQGRLMRKMRFIPSSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQTIRANVLLNRKKEKVNKKYTPVIDRRRQLSPGFLEDALEEEDETDYIDARRSRRRFEEDLEAEARAEKRIMNAKKGTRDIPRKPSLPASKSSGRPVDFSDSEREESEYETEEEDDAHGRVEEPEQEYEEEGEEDYERDEEAEVNEVSDVDEEAEEPKHKVRDYGGSHKRKGIESDEESPPRKVATHRRMAVVYDSDDE 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8169628 8176718 - CmaCh13G010810.1 Cma13g01081 306908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01081 623 MobiDBLite consensus disorder prediction 493 623 - -
Cma13g01081 623 Pfam Leo1-like protein 261 420 IPR007149 GO:0006368|GO:0016570|GO:0016593
Cma13g01081 623 PANTHER LEO1 PROTEIN 2 622 IPR007149 GO:0006368|GO:0016570|GO:0016593
Cma13g01081 623 PANTHER BNAANNG06810D PROTEIN 2 622 - -
Cma13g01081 623 MobiDBLite consensus disorder prediction 1 256 - -
Cma13g01081 623 MobiDBLite consensus disorder prediction 576 623 - -
Cma13g01081 623 MobiDBLite consensus disorder prediction 77 167 - -
Cma13g01081 623 MobiDBLite consensus disorder prediction 527 575 - -
Cma13g01081 623 MobiDBLite consensus disorder prediction 182 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01081 K15177 LEO1; RNA polymerase-associated protein LEO1 - csv:101221752 1028.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00826 Cma-Chr1:4422002 Cma13g01081 Cma-Chr13:8169628 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g641 . Blo16g00172 . . . Bpe13g00308 Bma06g00156 . Cmo13g01129 . . . . . . Cpe20g00067 . . . . . . . . . . . . . . . Cone2ag0815 Cone16ag0199 . . Lsi02g00109 . Chy12g01508 Cme12g01953 . . Bda11g01718 . . . . . Sed08g2112 . . Cma13g01081 . Car13g00918 . . . Bhi08g01102 Tan05g2374 Cmetu12g0892 . Hepe07g2474 . . Cla04g01164 Cam04g1222 Cec01g1733 Cco01g1779 Clacu04g1249 Cmu04g1228 Cre01g1524 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005345 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 5 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01081 Cma_Chr13 FPKM 32.757923 33.010845 35.818687 34.970406 23.931581 27.003807 26.155151 44.904831 46.915432 43.714294