Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01086 ATGTTTGGTTCAAGGAAGGGTCATTTGAGGATAGGGAAACATGGTTCTACCCCGAACCCTTTTGAGTCTGACGATGGTGTTAAAGCTAAGCAAAACCAGGTTTCTGCACAAAGGACTTCGTCAGACCCTTCATTAGTGGCGGAAAATTTTGGCTCCAATCCTTTTGATGATGATCATGGACATGCTCCCTCTTCTTCAAGTTCACTAACTTGGTCAGAAAGGAACAAGTACAAGAATGATTTCCGTGACTCGGGAGGAATAGAAAACCAATCAGTGCAGGAGCTGGAGAATTATGCTGTTTATAAGTCTGAAGAGACAACAAAAGCAGTGAATGGCTGTCTAAAGATTGCTGAAGAGATAAGGGATGATGCAACCCAAACTTTGGTTGCCTTGCATCAGCAGGGTGAGCAAATTACCAGGACTCATGTGGTTGCTGCTGACATTGATTATGACCTCAGTCGGGGAGAGAAACTGCTGGGAAATCTAGGGGGAATGTTCTCTAAGACATGGAAGCCAAAGAAAACTCGACCAATATCAGGACCTGTTATAAGCTCAGAGGATTTAGTAAGAAGAAAGGGTAACCACATGGAGCAGAAGGAAAAGTTGGGATTGACACATCATAAGGGCCGGACCAATACAAAAGCTGCATATGCCGAACCTACCAGTGCAATTCAAAAAGTTGAGGTTTGTATTTGCTATCTGTAA 705 43.4 MFGSRKGHLRIGKHGSTPNPFESDDGVKAKQNQVSAQRTSSDPSLVAENFGSNPFDDDHGHAPSSSSSLTWSERNKYKNDFRDSGGIENQSVQELENYAVYKSEETTKAVNGCLKIAEEIRDDATQTLVALHQQGEQITRTHVVAADIDYDLSRGEKLLGNLGGMFSKTWKPKKTRPISGPVISSEDLVRRKGNHMEQKEKLGLTHHKGRTNTKAAYAEPTSAIQKVEVCICYL 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8208255 8209895 + CmaCh13G010860.1 Cma13g01086 306913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01086 234 Gene3D - 86 164 - -
Cma13g01086 234 MobiDBLite consensus disorder prediction 26 48 - -
Cma13g01086 234 CDD SNARE_SNAP25N_23N_29N_SEC9N 97 161 IPR044766 GO:0005484|GO:0031201
Cma13g01086 234 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 229 - -
Cma13g01086 234 SUPERFAMILY SNARE fusion complex 90 160 - -
Cma13g01086 234 MobiDBLite consensus disorder prediction 1 71 - -
Cma13g01086 234 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01086 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101221282 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00221 Cma-Chr10:981152 Cma13g01086 Cma-Chr13:8208255 7.78E-82 dispersed
Cma01g00821 Cma-Chr1:4381257 Cma13g01086 Cma-Chr13:8208255 2.53E-94 wgd
Cma11g00190 Cma-Chr11:970153 Cma13g01086 Cma-Chr13:8208255 5.01E-82 wgd
Cma13g01086 Cma-Chr13:8208255 Cma18g01117 Cma-Chr18:9079296 3.27E-76 wgd
Cma13g01086 Cma-Chr13:8208255 Cma04g01693 Cma-Chr4:8513095 2.06E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01086 Cma_Chr13 FPKM 24.681372 23.617622 26.640717 27.617125 8.713945 7.156189 6.928302 11.233036 13.078098 11.158545