Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g01092 | ATGGGGTGTGTGAGCTCGAAGCAGGCGGTGTCCGTGACGCCTGCCTTCGATCACTCCGGCGCATTTCGGGACAGTGATTCAACGGCGGTGGGGAGCTCGGGTCGCAGCCGATGTGGCAATGGGGAGATTGAGAGGAGTTCCAAGCCGAAGGCCAAGAGGAAGTCGAAGGGGTCCAGTGAGTTCTATGGGGTTGGGAGCGAGCTGGGTGAATTGGGGAGGGCGAGTTCAAATGGCGGAGGGAATCAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATTGAAAGTGAGCAAGTGGCAGCAGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGATTCCTCTCCGGTCCGATGCCTATGAGAAATTGGAAAAGATTGGACAAGGTACGTATAGCAGTGTATTCCGAGCACGTGAACTCGAAACAGGAAGGATTGTTGCTTTAAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCGCGATTCTCCGCAGGCTTGATCACCCTAATATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAATATTTACCTTGTGTTCGAGTATATGGACCACGACATTACTGGGCTCTTGTCCTCCCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGCGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCGATAATGAAGGGGTGTTAAAGGTAGCTGATTTTGGATTGGCGAACTTCTATAATTCCGGGCACCAGCAACCTCTAACGAGTCGTGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCTGAACTCCTTGTTGGGAAACCTATTCTTCAGGGAAGGACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAGTACTGGAAAAAGTCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCATATAATAATTGCTTGCGCCAGACATTCAAAGATTATCCTTCGACGACTGTGAACTTGCTAGAAACGCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGCGTATTTCAGTACAAAACCGTATGCATGTGATCCATCAAGCTTGCCAATTTATCCACCTAGCAAAGAGATTGATGCAAAACAAAGAGAGGAGACGAAAAGGAAAAAACATAGTGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAATGCGAAATCATCATGGAACCAATAAATTGGCACCAGCAGAGGACTCATCAGTCTCAGCTCGAGCTCTGCATACAATTAGTATTAATGCACAAGATCTAAAAGAAGAAAAGGTTACTAAAGCTGGCCAGGCGCAAAAGCTGTCCATTGATAAACTGGAAGACACTATACATGAAACGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCTCTACAAGTTTCGACATCGAGTGGCTTTGCGTGGGCAAGACGACGAAGAGACGATGCCTCTATTCAATGTTATTCCAGATCAATTTCACGAGGAGAACTAATTAATGGGCTGGACCATTCTGCTACATCAAGAAGCAATTTGGAGTCCAAGTTTCATGAAAATGTAGACATGTTATCCATGAGCCGCTCAAGTTCCAAGGGTCCTGAATCAAGTGAGAGATCCAAGGTTGTGATAAGGAATCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCCCAGGACTTTGCAGTGGCACTTTCTTTGCGAGATGAACTGGGAGCTAAGAGGAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGATCATGGTTTCAACGAGGTAAGAATTGA | 2085 | 46.28 | MGCVSSKQAVSVTPAFDHSGAFRDSDSTAVGSSGRSRCGNGEIERSSKPKAKRKSKGSSEFYGVGSELGELGRASSNGGGNQTLSFRLGNLNKYIESEQVAAGWPAWLSAVAGEAIQGWIPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIAILRRLDHPNIIKLEGLITSRLSCNIYLVFEYMDHDITGLLSSPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVDNEGVLKVADFGLANFYNSGHQQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPSTTVNLLETLLSVEPYKRGVASSALTSAYFSTKPYACDPSSLPIYPPSKEIDAKQREETKRKKHSGRARGLDNRRLMRNHHGTNKLAPAEDSSVSARALHTISINAQDLKEEKVTKAGQAQKLSIDKLEDTIHETNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIQCYSRSISRGELINGLDHSATSRSNLESKFHENVDMLSMSRSSSKGPESSERSKVVIRNQWGKFERPDSFDTSDEYHSQDFAVALSLRDELGAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8224255 | 8230094 | + | CmaCh13G010920.1 | Cma13g01092 | 306919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g01092 | 694 | MobiDBLite | consensus disorder prediction | 15 | 60 | - | - | |
Cma13g01092 | 694 | ProSiteProfiles | Protein kinase domain profile. | 127 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g01092 | 694 | PANTHER | CELL DIVISION PROTEIN KINASE | 52 | 689 | - | - | |
Cma13g01092 | 694 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 247 | 259 | IPR008271 | GO:0004672|GO:0006468 | |
Cma13g01092 | 694 | Gene3D | Phosphorylase Kinase; domain 1 | 114 | 209 | - | - | |
Cma13g01092 | 694 | CDD | STKc_CDK9_like | 127 | 411 | - | - | |
Cma13g01092 | 694 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 52 | 689 | - | - | |
Cma13g01092 | 694 | SMART | serkin_6 | 127 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g01092 | 694 | SUPERFAMILY | Protein kinase-like (PK-like) | 121 | 417 | IPR011009 | - | |
Cma13g01092 | 694 | Pfam | Protein kinase domain | 127 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g01092 | 694 | MobiDBLite | consensus disorder prediction | 41 | 57 | - | - | |
Cma13g01092 | 694 | Gene3D | Transferase(Phosphotransferase) domain 1 | 210 | 450 | - | - | |
Cma13g01092 | 694 | ProSitePatterns | Protein kinases ATP-binding region signature. | 133 | 156 | IPR017441 | GO:0005524 | |
Cma13g01092 | 694 | MobiDBLite | consensus disorder prediction | 432 | 473 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02787 | Cma-Chr4:18688997 | Cma13g01092 | Cma-Chr13:8224255 | 0 | dispersed | |
Cma13g01092 | Cma-Chr13:8224255 | Cma15g00248 | Cma-Chr15:1187701 | 0 | dispersed | |
Cma01g00805 | Cma-Chr1:4338905 | Cma13g01092 | Cma-Chr13:8224255 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69036 | PF00069 | Pkinase | 1.50E-69 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g01092 | - | - | csv:101220347 | 1212.21 |