Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01092 ATGGGGTGTGTGAGCTCGAAGCAGGCGGTGTCCGTGACGCCTGCCTTCGATCACTCCGGCGCATTTCGGGACAGTGATTCAACGGCGGTGGGGAGCTCGGGTCGCAGCCGATGTGGCAATGGGGAGATTGAGAGGAGTTCCAAGCCGAAGGCCAAGAGGAAGTCGAAGGGGTCCAGTGAGTTCTATGGGGTTGGGAGCGAGCTGGGTGAATTGGGGAGGGCGAGTTCAAATGGCGGAGGGAATCAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATTGAAAGTGAGCAAGTGGCAGCAGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGATTCCTCTCCGGTCCGATGCCTATGAGAAATTGGAAAAGATTGGACAAGGTACGTATAGCAGTGTATTCCGAGCACGTGAACTCGAAACAGGAAGGATTGTTGCTTTAAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCGCGATTCTCCGCAGGCTTGATCACCCTAATATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAATATTTACCTTGTGTTCGAGTATATGGACCACGACATTACTGGGCTCTTGTCCTCCCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGCGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCGATAATGAAGGGGTGTTAAAGGTAGCTGATTTTGGATTGGCGAACTTCTATAATTCCGGGCACCAGCAACCTCTAACGAGTCGTGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCTGAACTCCTTGTTGGGAAACCTATTCTTCAGGGAAGGACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAGTACTGGAAAAAGTCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCATATAATAATTGCTTGCGCCAGACATTCAAAGATTATCCTTCGACGACTGTGAACTTGCTAGAAACGCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGCGTATTTCAGTACAAAACCGTATGCATGTGATCCATCAAGCTTGCCAATTTATCCACCTAGCAAAGAGATTGATGCAAAACAAAGAGAGGAGACGAAAAGGAAAAAACATAGTGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAATGCGAAATCATCATGGAACCAATAAATTGGCACCAGCAGAGGACTCATCAGTCTCAGCTCGAGCTCTGCATACAATTAGTATTAATGCACAAGATCTAAAAGAAGAAAAGGTTACTAAAGCTGGCCAGGCGCAAAAGCTGTCCATTGATAAACTGGAAGACACTATACATGAAACGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCTCTACAAGTTTCGACATCGAGTGGCTTTGCGTGGGCAAGACGACGAAGAGACGATGCCTCTATTCAATGTTATTCCAGATCAATTTCACGAGGAGAACTAATTAATGGGCTGGACCATTCTGCTACATCAAGAAGCAATTTGGAGTCCAAGTTTCATGAAAATGTAGACATGTTATCCATGAGCCGCTCAAGTTCCAAGGGTCCTGAATCAAGTGAGAGATCCAAGGTTGTGATAAGGAATCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCCCAGGACTTTGCAGTGGCACTTTCTTTGCGAGATGAACTGGGAGCTAAGAGGAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGATCATGGTTTCAACGAGGTAAGAATTGA 2085 46.28 MGCVSSKQAVSVTPAFDHSGAFRDSDSTAVGSSGRSRCGNGEIERSSKPKAKRKSKGSSEFYGVGSELGELGRASSNGGGNQTLSFRLGNLNKYIESEQVAAGWPAWLSAVAGEAIQGWIPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIAILRRLDHPNIIKLEGLITSRLSCNIYLVFEYMDHDITGLLSSPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVDNEGVLKVADFGLANFYNSGHQQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPSTTVNLLETLLSVEPYKRGVASSALTSAYFSTKPYACDPSSLPIYPPSKEIDAKQREETKRKKHSGRARGLDNRRLMRNHHGTNKLAPAEDSSVSARALHTISINAQDLKEEKVTKAGQAQKLSIDKLEDTIHETNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIQCYSRSISRGELINGLDHSATSRSNLESKFHENVDMLSMSRSSSKGPESSERSKVVIRNQWGKFERPDSFDTSDEYHSQDFAVALSLRDELGAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8224255 8230094 + CmaCh13G010920.1 Cma13g01092 306919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01092 694 MobiDBLite consensus disorder prediction 15 60 - -
Cma13g01092 694 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01092 694 PANTHER CELL DIVISION PROTEIN KINASE 52 689 - -
Cma13g01092 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Cma13g01092 694 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Cma13g01092 694 CDD STKc_CDK9_like 127 411 - -
Cma13g01092 694 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 52 689 - -
Cma13g01092 694 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01092 694 SUPERFAMILY Protein kinase-like (PK-like) 121 417 IPR011009 -
Cma13g01092 694 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01092 694 MobiDBLite consensus disorder prediction 41 57 - -
Cma13g01092 694 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Cma13g01092 694 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Cma13g01092 694 MobiDBLite consensus disorder prediction 432 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02787 Cma-Chr4:18688997 Cma13g01092 Cma-Chr13:8224255 0 dispersed
Cma13g01092 Cma-Chr13:8224255 Cma15g00248 Cma-Chr15:1187701 0 dispersed
Cma01g00805 Cma-Chr1:4338905 Cma13g01092 Cma-Chr13:8224255 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69036 PF00069 Pkinase 1.50E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01092 - - csv:101220347 1212.21