Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma13g01093 | ATGTCCATCGAGATTTGGACCGGACTGGGGGAGGAACAGCGCCATCTGATGGCGCTGTTTAGAAAAATATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATTGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCTACGTCTTGGAAGAGGATGAGTACAAAGCATATTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAAACTAAAACTTGGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCTCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTTTCATTGGAGAGACAAAAAAATGTATTGTTGATGAACTGTGAACCAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAACTCTCTTATTGTACTGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTACAGAACTTCTCCATGTCCTTTCTCCAGTAAACTCACAGCCTTCTCAAATGAGATACCTTCACTATATTTCTTGGAGAAATCTAGGTTCTTATTGGCCTATACCTGATACACCTCTAATTTTAGACTGTCTGATATTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGCAGGCCTATCATACGCATTTACGGTCCAGACCCTTTAACACCAGGAAACAGATGTCCTAAACTTTTTTTTTCCAGTGCAAAGATGGAAAGAAATGGTTTCCAGTATCTACAGGCTGCAAGCAGAGTGGTAAAAATGGATGTTCGTTGTCATGTTCAAGGCGATGTTGTTCTTGAATGCATCCATTTAGATGGAGATCTAATACACGAGGAAGTGATGTTTAGAGTTATGTTTCACACAGCGTTTGTGCATTCAAACAGTTTGAAGATCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAAGGAGAAGTTTCCTAAAAATTTTAGAGTAGAGGTACATTTTCTGAATGCTGAACATATTGTGCCAAACCTCACCTCAGCAGCAAAAAGTGATGACAAAATCGAAATCGAAAGCAATTCGACTGAGGAGTTTTTCGAAGTGGAAGAAATATTTAGCAATTCTGTTGACGTGCAGGAAGTAATGAGGGATTATGATGTTCAAATGGTACATGCGAATGAAACGAATGTTATAGACAATCAAGTAGTGTTGAAGGAAGATGCAGACCCGCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCATGACTTTGACAAGAAGATGGATTGTAACGTTGAAGCAGTGAAGGGCATCACTGTTGATGATGTGACTTTCAAAACAGATGAAAAAATGGACTCTGGTCTTCATGCCGTGAAGGACATTGTTGTGAATTATGGAGATAACAAGACAAATTCTTTATTATTTTCTGGTAATGTACTGAGACGTACAGGGATCAAGGAACTGATAGACGATGCTTATGACATGTTGGAAGGGGTGGAGCATAAAGGGTATGGGGAAGATACTGCTAATCCACACGTTGAGTTAAAGCATCCTTCAAAAATGATGGAAGCTGATGCGTGGAGGCTTAAACAGAAGCCCAAACAGCCTGAAAAACGGGACTTTCTTGTAAAACAGGCAAAACCAAATACTCTTCCACCAGCTCTTCAGGCTAACACATCTTTCTTGCATGTATCATCTCCTAAAGTTTCTTTGTCACCCTCTTCATATTTTCACATAAATGCAAGATCTCCTCCTCCACCTCCACCACCACCACCTCCTCCACCTTCCAATCACTTGGCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCACCTCCGCCACCACCACCTCCTCCACCTTCCAATCACTTGGCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCACCTCCGCCTCCACCTCCCATACCTGGAGCTCTACCGCAATTATCTCCCATACGGCCACCGGCTTCACATGGAGCTCTGCTTTCTCCACGCCTAACAAATGCTAGAGCTCTGCCACCACCCCCTCCCCCACCTCCTCCATTTCAGAGGACAGCTTCTGCACATTTAACCCAAGGGCGACAGGCTTTAACATCTCCAACAACATGTGTTGTATCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACTACTGGTCCTCTTGCACTGGTTCCTTCTTCCAGATCTCCAGGAGGTATGTCTCCACACCTAGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTAATGAGGGGACGTGGGTTCTCGCGGAGCACAGGGGTGGCTGCTAAAGTGCCTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTAACTCGGGTACCAAAAGGGAGCTTATGGGAAGAATTGCAAAGATGTGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGACTGTCCCTAAACCTATTGCTGATTCAGGAGGTAAATCCGGAGGACGAAGAAAGTCAGTTGGATCAAAATTGGACAAAATTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTCGGATGCCACTGTCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGTCCCACCAAAGAAGAGATGGAGCTTCTCAAGGGATACTCTGGTGACATGGATAAACTTGGCAAGTGCGAACAGTACTTTCTAGAGATGATGCAAGTTCCTCGTGTGGAGTCGAAGCTAAGAGTATTTTCTTTCAAGATTCACTTCAGCTCACAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTTTCTGTCAAGAGGTGAGGAGTTCTTGCAAATTGAAGGAGATATTGAAAAGAATTCTTTGCCTGGGAAATATGTTAAACCAAGGAACTGCTAGGGGTTCTGCAATTGGGTTCAGGTTGGATAGTCTCTCAAAACTCGCTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCGTTGCTTCTAAGTCACCATCACTTCTTGAATTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCGGGAACTAGTTGCTTCGGAAAGTGATGGCCCCATCTCTCAAAATTTTCGTAAGATATTGAAAGGATTTGTTAGTCTTGCCGAGATGGAGGTCAAATCTGTGACCGTTCTTTACTCGGTCGTGGGTAGAAATGCTGATGCACTTGCTCTATATTTTGGCGAGGATCCTTCCCGTTGTCCATTTGAACAAGTTACAGGAACTCTGTTCCATTTTACAAGATCCTTTCTGAAAGCACATGAAGAGAATAGCAAGCAGTTAGAAATGGAGATGAGAAAGCTGAGAAAATCTAACAAGATCGATACAAAACTGAGTTTGGAGCTGGTAGAAACTTTAGCCTCCCAGAAGGTTTGCCAACACTAA | 3678 | 42.96 | MSIEIWTGLGEEQRHLMALFRKIFYRKPPDRLLEIAERVYVFDCCFSTYVLEEDEYKAYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTWDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWFSLERQKNVLLMNCEPGGWPILAFMLSTLLLYCKQYEGEQKTLEMVYRQAPTELLHVLSPVNSQPSQMRYLHYISWRNLGSYWPIPDTPLILDCLIFRELPMLDGGKGCRPIIRIYGPDPLTPGNRCPKLFFSSAKMERNGFQYLQAASRVVKMDVRCHVQGDVVLECIHLDGDLIHEEVMFRVMFHTAFVHSNSLKINRDEVDVLWDAKEKFPKNFRVEVHFLNAEHIVPNLTSAAKSDDKIEIESNSTEEFFEVEEIFSNSVDVQEVMRDYDVQMVHANETNVIDNQVVLKEDADPPTFQRCKSFGGSHDFDKKMDCNVEAVKGITVDDVTFKTDEKMDSGLHAVKDIVVNYGDNKTNSLLFSGNVLRRTGIKELIDDAYDMLEGVEHKGYGEDTANPHVELKHPSKMMEADAWRLKQKPKQPEKRDFLVKQAKPNTLPPALQANTSFLHVSSPKVSLSPSSYFHINARSPPPPPPPPPPPPSNHLAPKSSSLVCGNTPKHSAPPPPPPPPPPPSNHLAPKSSSLVCGNTPKHSAPPPPPPPPIPGALPQLSPIRPPASHGALLSPRLTNARALPPPPPPPPPFQRTASAHLTQGRQALTSPTTCVVSSSLPSPICEAPSPPQPTTGPLALVPSSRSPGGMSPHLGAKGVSSSTDVKTSSIVMRGRGFSRSTGVAAKVPQRSSLKPLHWSKVTRVPKGSLWEELQRCGDSESAPEFDVSELETLFSVTVPKPIADSGGKSGGRRKSVGSKLDKIHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDMDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSFCQEVRSSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLADTRASNNKLTLMHYLCKVVASKSPSLLEFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKRELVASESDGPISQNFRKILKGFVSLAEMEVKSVTVLYSVVGRNADALALYFGEDPSRCPFEQVTGTLFHFTRSFLKAHEENSKQLEMEMRKLRKSNKIDTKLSLELVETLASQKVCQH | 1225 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 8230983 | 8242737 | + | CmaCh13G010930.1 | Cma13g01093 | 306920 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma13g01093 | 1225 | SMART | PTEN_C2_2 | 214 | 354 | IPR014020 | - | |
| Cma13g01093 | 1225 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 217 | 352 | IPR035892 | - | |
| Cma13g01093 | 1225 | Coils | Coil | 1182 | 1202 | - | - | |
| Cma13g01093 | 1225 | MobiDBLite | consensus disorder prediction | 663 | 683 | - | - | |
| Cma13g01093 | 1225 | MobiDBLite | consensus disorder prediction | 631 | 649 | - | - | |
| Cma13g01093 | 1225 | MobiDBLite | consensus disorder prediction | 718 | 745 | - | - | |
| Cma13g01093 | 1225 | MobiDBLite | consensus disorder prediction | 702 | 717 | - | - | |
| Cma13g01093 | 1225 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 706 | 1201 | - | - | |
| Cma13g01093 | 1225 | Pfam | Formin Homology 2 Domain | 810 | 1181 | IPR015425 | - | |
| Cma13g01093 | 1225 | MobiDBLite | consensus disorder prediction | 593 | 784 | - | - | |
| Cma13g01093 | 1225 | Pfam | C2 domain of PTEN tumour-suppressor protein | 215 | 352 | IPR014020 | - | |
| Cma13g01093 | 1225 | ProSiteProfiles | C2 tensin-type domain profile. | 216 | 355 | IPR014020 | - | |
| Cma13g01093 | 1225 | SMART | it6_source | 803 | 1221 | IPR015425 | - | |
| Cma13g01093 | 1225 | MobiDBLite | consensus disorder prediction | 598 | 617 | - | - | |
| Cma13g01093 | 1225 | Gene3D | Formin, FH2 domain | 804 | 1192 | IPR042201 | - | |
| Cma13g01093 | 1225 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 805 | 1207 | IPR015425 | - | |
| Cma13g01093 | 1225 | PANTHER | FORMIN-J | 664 | 1205 | - | - | |
| Cma13g01093 | 1225 | PANTHER | FORMIN-J | 17 | 680 | - | - | |
| Cma13g01093 | 1225 | Gene3D | Protein tyrosine phosphatase superfamily | 29 | 213 | IPR029021 | - | |
| Cma13g01093 | 1225 | Coils | Coil | 1088 | 1108 | - | - | |
| Cma13g01093 | 1225 | Gene3D | - | 219 | 353 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00209 | Cma13g01093 | CCT | |
| Cma11g00123 | Cma13g01093 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g00209 | Cma-Chr10:925548 | Cma13g01093 | Cma-Chr13:8230983 | 0 | dispersed | |
| Cma10g00473 | Cma-Chr10:2140987 | Cma13g01093 | Cma-Chr13:8230983 | 6.29E-138 | dispersed | |
| Cma11g00123 | Cma-Chr11:655413 | Cma13g01093 | Cma-Chr13:8230983 | 0 | dispersed | |
| Cma11g00467 | Cma-Chr11:2260206 | Cma13g01093 | Cma-Chr13:8230983 | 6.42E-135 | dispersed | |
| Cma13g01093 | Cma-Chr13:8230983 | Cma19g00192 | Cma-Chr19:1268107 | 2.32E-109 | dispersed | |
| Cma01g00804 | Cma-Chr1:4326581 | Cma13g01093 | Cma-Chr13:8230983 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma13g01093 | - | - | bhj:120083459 | 1695.25 |