Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01095 ATGGAGTTCGGGACTGGAGGCGGCGGCTCCGGTTGGGATAACGATTCCTCCTCCGACCCACAACGCCGGAAAAAATGCTACCATCGTCACACTGCCAATCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAATGCCCACACCCAGACGAGAAACAGAGATTACAGTTAAGCAGAGAACTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGACAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCCCTCAAGAATGTCATCTGCCCCTCCTGCGGTGGCCCTCCTCTTCAGGACCCTTACTTCGACGAACACAAACTACGAATCGAAAACGCCCATTTGAAGGAAGAGCTTGATAGAGTATCTAGCATTGCGGCCAAGTTCATTGGGAGGCCAATCTCTCAGCTTCCACCCATTCACCCACCTCACTTTTCCTCATTAGACCTATCCATGGCTAGTTTTCCCTCCCAAGAAATTGGCTGCCCTTCTCTTGATCTTGATTTACTTCCTGCAAGTTCTACAAGTGTTCCCACTTTGCCATACCACCACCCAATTCACCTCTCCGCCGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCGGAGTTGCTCAGGCTTTCCCAAACTAATGAGCCATTCTGGATCAAATCAACAAATGATGGACGCGACGTTCTCGACCTCGAAACCTATGAACAGGCTTTTCCAAGACCCAACTCTCCCTTCAAGAATCCCCATTTTCGCACAGAAGCAACTAGAGATTCAGGCGTCGTGATCATGAATAGTGAAGCATTGGTTGATATGTTTATGGACTTGAACAAATGGACAGAATTATTTCCCACAATTGTGTCGATTGCAAGAACAATCGAAGTTATATCGTCTGGATTGTTGGGAACTCAGAATGGCTCGTTGCAACTGATGTACCAAGAACTGCAGCTACTCTCCCCATTGGTTTCGACTCGTCATTTTTACATCCTCAGATTTTGTCAACAAATCGAGCACGGCACGTGGGCCGTGGTTGATGTTTCCTACAACATCCCCAGAGAAAATCAAGTAGTTTCTCATTCTCAATGTCACCGCCTTCCCTCTGGCTGCTTGATCCAGGACATGCCTAACGGTTACTCCAAGGTTACTTGGATTGAGCATGTGGAGGTGGAAGATAGAGGCTCCTCTCATTGGCTTTGTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGTTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGCTTGCCTGTTTAATGATGACTGGTAGTTCCAATCAGGATCTCGGCGGAGTAATTCCTTCTTCAGAAGGGAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTCTGTGCCAGTATCAGCTCATCTCATGGCCACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACGGTGCATAAAAGCATGGATCCTGGCCAGCCGAACGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCTCAGTATCTCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTGTCGGATGGCAACCCGGTCCAGGAGGTTGCTCATATAACCAACGGATCCCATCCAGGGAATGCCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAATAACATGTTGATACTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGTAATGAGTGGGGAGGACCCATCAAGTATTCCCTTACTACCTTCAGGATTCACAATTCTACCAGACGGTCGACGGGACCAAGGAGAGGGCACATCGAGCAGCCTCGATGTCCACAGCAGGTCAGGTGGCTCACTGTTGACCGTGGCGTTTCAGATACTCGTAAGCAGCTTGCCATCAGGAAAGCTGAACTTAGAGTCAGTAACAACGGTTAATAACCTCATCAGCACCACCCTCCACCAGATCAAAACAGCCTTAAATTGTCATAGTTCCTGA 2127 47.95 MEFGTGGGGSGWDNDSSSDPQRRKKCYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKFIGRPISQLPPIHPPHFSSLDLSMASFPSQEIGCPSLDLDLLPASSTSVPTLPYHHPIHLSAVDKSLMTEIATNAMAELLRLSQTNEPFWIKSTNDGRDVLDLETYEQAFPRPNSPFKNPHFRTEATRDSGVVIMNSEALVDMFMDLNKWTELFPTIVSIARTIEVISSGLLGTQNGSLQLMYQELQLLSPLVSTRHFYILRFCQQIEHGTWAVVDVSYNIPRENQVVSHSQCHRLPSGCLIQDMPNGYSKVTWIEHVEVEDRGSSHWLCRDLIHSGLAFGAERWLATLQRMSERLACLMMTGSSNQDLGGVIPSSEGKRSMMKLAQRMVNNFCASISSSHGHRWTTLSGMNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLSVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNAISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVVMSGEDPSSIPLLPSGFTILPDGRRDQGEGTSSSLDVHSRSGGSLLTVAFQILVSSLPSGKLNLESVTTVNNLISTTLHQIKTALNCHSS 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8246548 8250717 - CmaCh13G010950.1 Cma13g01095 306922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01095 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 706 IPR042160 -
Cma13g01095 708 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Cma13g01095 708 Gene3D - 12 97 - -
Cma13g01095 708 Pfam START domain 222 445 IPR002913 GO:0008289
Cma13g01095 708 CDD START_ArGLABRA2_like 216 445 - -
Cma13g01095 708 SUPERFAMILY Bet v1-like 468 700 - -
Cma13g01095 708 SUPERFAMILY Bet v1-like 215 447 - -
Cma13g01095 708 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Cma13g01095 708 ProSiteProfiles START domain profile. 212 449 IPR002913 GO:0008289
Cma13g01095 708 CDD homeodomain 24 82 IPR001356 GO:0003677
Cma13g01095 708 Gene3D - 219 448 IPR023393 -
Cma13g01095 708 MobiDBLite consensus disorder prediction 1 27 - -
Cma13g01095 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 706 - -
Cma13g01095 708 SMART START_1 221 446 IPR002913 GO:0008289
Cma13g01095 708 SMART HOX_1 23 85 IPR001356 GO:0003677
Cma13g01095 708 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Cma13g01095 708 SUPERFAMILY Homeodomain-like 10 81 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01629 Cma-Chr2:9223337 Cma13g01095 Cma-Chr13:8246548 0 dispersed
Cma13g01095 Cma-Chr13:8246548 Cma02g00163 Cma-Chr2:753284 0 dispersed
Cma19g00218 Cma-Chr19:1489764 Cma13g01095 Cma-Chr13:8246548 0 dispersed
Cma14g00866 Cma-Chr14:4462605 Cma13g01095 Cma-Chr13:8246548 0 transposed
Cma01g00755 Cma-Chr1:4065459 Cma13g01095 Cma-Chr13:8246548 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36148 PF01852 START 8.60E-45 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01095 K09338 - csv:101215660 1296.57