Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01096 ATGGCTTCCTTTGAAAAAGACGATACACCGATGCTATCAAACACTGGTCCACCATTGTTAGATGAACAACTGGGTTCTTATTTTCCTTCGTATGCATCATTGGCCCGGAGTTCATCGCTATCAATTCCAACTTCTTCTGGGATATATGTCAGTGATGCAAAGCTTGTTGGTTATACTGGTCCCTTAAGAATTGAAAGAAAAAGTCCATTCCTAGAGATTGGTTCAAAATATACTCGCCGTAAACCTGAAAAATCTTCACAGTCAAGTCCAGGTGTGACTGAAAGCAAAACTGCAGAGCCATTGACAGACAAATTTCCTTCGTTCAAGACGAATGACGAGTCTGATTGGGCCATTCAACACTTTGCTGGCAGAAATGAACACTTAATAAAGTCTGGCCAGCTGGGAGTGTGCAATGATCCTTTCTGTATAACATGCCCAACATATAATTCCAAATCATCGAAACAGAAAAGCTCAAGAATGAGAGGCATATTTGACCCTGAGTTTCACAAGGATCTCTACGGAGAAGGGAAAGGTTGGGCAGTGAAGTTTCGGTCTGTCTGGTGCTTCTTGCTTCCGTATATTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAACAAGTTTTTTGTTATTTCTTGCTTACTGGCGATCTTCTTGGACCCGTTATTTTTCTTCGTGCTTGCTGTCCACTTTGTTAAGAAGTGTATATTTATTAATTGGCCGATGACCACAACATTGGTGGTTTTCCGAAGCATGACCGATTTTGTCTATTTCCTACACATGCTTCTCCAGTTTAGGTTGGCATACGTGGCACCAGAAACCAGAGTTGTTGGAGCAGGCGAATTAGTTGACCATCCGAAGAAAATTGCTAAGAACTACCTTAAAGGAAATTTTTTTATAGATGTGCTTGTTGTTTTACCGCTGCCTCAGATAATAGTTTTTCTAATCCTGCCAAACTCTTTGGGGACATCTGGAGCAAATCATGCAAAAAATCTGTTACGCACTGCAGTTATTGCTCAATATATTCCCAGACTGTACAGGTTTCTACCTCTTCTTGCTGGTCAGTCTCCAAGTGGCTTTGTTTTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTCACCTTTATGTTGGCTGGTCATATTGTTGGGTCTCTCTGGTATCTCTTTGGGCTTCAGGGGGTGAATCGATGTTTTCGGGATGCCTGCAATCGCACTGGAAATACGTCCTGCTTAGATTATATAGATTGTGGGCATGGGGACGAAGCTGGAAACCACAGTCCAGATTTACGGCGAGATCAGTGGAAAAGTAATGAGAATGCTACGGCATGTTTTGCTAAAGAAGGTTTTGATTATGGAATCTACCTTCAGGCTGTAAATCTTACTACAGAAAGCAATTTACTCACGAGATATACTTACTCATTGTTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGAAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGGGTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGATTTTTCTTCAGGCTCTTGGAAGAAGGAGGTTGGAAATGTCATTAAGACGTCGTGATGTTGAGCAGTGGATGGAGCATCGTCGCTTACCAGAGAGTTTAAGAAGGAAAGTACGACAGGCTGAAAGGTACAATTGGGCTTCTACAAGAGGCGTAAATGAAGAGAGGATTTTCGAAAATTTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTCAACAAGGTTCGCATTTTTGCACTGATGGACTATGAACCTATTTTAGATGCAATACGTGAGAGACTGCGACAAAGGACATACATAGAAGGAAGTGAGGTTTTTACTGCTGGAGATATCATTGAGAAGATGGTTTTCATTGTACGGGGGAAAATGGAGAGCCGTGTAGATGGGAACGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAACATGGTGTCTTGAGCATTCCTCCATAAACAGAGATATGAAGCGACATCAAATTCCAGCACAAAAATTGGTCAGCAACCGGACAGTAAAATGCTCGACGAATGTTGAAGCATTTTCTCTCCGGGCTGCAGACCTTGAAGAAGTGACCAGTATGTTTTCTAGATTCCTGCGAAACCCACGTGTTCAAGGAGCCATAAGGTATGAATCACCCTACTGGAGGTACCTAGCAGCAACGCGTATTCAAGTAGCTTGGAGGTACAGGAAAAGGCGTCTATCTCGAGCTCAAACCTCCCACTCTAACTACTAA 2328 42.44 MASFEKDDTPMLSNTGPPLLDEQLGSYFPSYASLARSSSLSIPTSSGIYVSDAKLVGYTGPLRIERKSPFLEIGSKYTRRKPEKSSQSSPGVTESKTAEPLTDKFPSFKTNDESDWAIQHFAGRNEHLIKSGQLGVCNDPFCITCPTYNSKSSKQKSSRMRGIFDPEFHKDLYGEGKGWAVKFRSVWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLLAIFLDPLFFFVLAVHFVKKCIFINWPMTTTLVVFRSMTDFVYFLHMLLQFRLAYVAPETRVVGAGELVDHPKKIAKNYLKGNFFIDVLVVLPLPQIIVFLILPNSLGTSGANHAKNLLRTAVIAQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSLWYLFGLQGVNRCFRDACNRTGNTSCLDYIDCGHGDEAGNHSPDLRRDQWKSNENATACFAKEGFDYGIYLQAVNLTTESNLLTRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQIFLQALGRRRLEMSLRRRDVEQWMEHRRLPESLRRKVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQRTYIEGSEVFTAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLTWCLEHSSINRDMKRHQIPAQKLVSNRTVKCSTNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAATRIQVAWRYRKRRLSRAQTSHSNY 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8252978 8265755 - CmaCh13G010960.1 Cma13g01096 306923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01096 775 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 770 - -
Cma13g01096 775 CDD CAP_ED 604 722 IPR000595 -
Cma13g01096 775 Pfam Ion transport protein 208 526 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma13g01096 775 MobiDBLite consensus disorder prediction 75 107 - -
Cma13g01096 775 SUPERFAMILY Voltage-gated potassium channels 203 533 - -
Cma13g01096 775 Gene3D - 212 528 - -
Cma13g01096 775 Gene3D Helix hairpin bin 532 596 - -
Cma13g01096 775 Gene3D Jelly Rolls 602 728 IPR014710 -
Cma13g01096 775 ProSiteProfiles cAMP/cGMP binding motif profile. 617 674 IPR000595 -
Cma13g01096 775 SUPERFAMILY cAMP-binding domain-like 532 730 IPR018490 -
Cma13g01096 775 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 7 770 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01096 Cma-Chr13:8252978 Cma10g00428 Cma-Chr10:1952298 6.29E-140 dispersed
Cma13g01096 Cma-Chr13:8252978 Cma02g01109 Cma-Chr2:6588999 5.23E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01096 K05391 - csv:101215903 1289.25