Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01103 ATGGCTCAGACGGCAAGTCGATCCAAATTGCGGTGGGGGGAGCTAGATGACGATGACGGTGATCTGGATTTTCTTCTACCTCCCAAGAAAATTATCGGTCCAGATGAGAATGGCTTGAAGAGAACTATTGAATATCAGTTTAACGAAGATGGTAATAAGGTTAAGATCACAACCACCTCGCGTACTCGCAAGCTCGCCCATGCTCGCCTCAGTAAACACGCCATTGAGCGTCGATCTTGGGCGAAGTTTGGTGACGCTGTGCACGAAGATGTTGGCAGCCGCCTCACTATGGTCTCCACCGAGGAGATCCTTCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCGAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTATGTAGGACTTGTGGCAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAGGACTTGGCACTACAAGGCGAGGGATTGGATAAGGCTGCCGCACCAGAGGCTACAGCTGCTGCTCCTGGTGGTGCAACGAAGGGGACATATGTTCCTCCAGGTATGAGAGCAGGGGCAGACAGGACTGGAACCGATATGAGACGTAGGAACGATGAAAACTCTGTTCGTGTCACCAATCTCTCGGAGGACACAAGAGAGCCTGACCTGCTCGAGCTTTTCCGACCTTTTGGTGCCGTTAGCCGAGTTTATGTTGCAGTTGATCAAAAGACTGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTCGAGTGGGCGACTCCAAGGGCTACTTAA 870 50.34 MAQTASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGLKRTIEYQFNEDGNKVKITTTSRTRKLAHARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLALQGEGLDKAAAPEATAAAPGGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8280929 8282845 - CmaCh13G011030.1 Cma13g01103 306930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01103 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cma13g01103 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Cma13g01103 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Cma13g01103 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Cma13g01103 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Cma13g01103 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Cma13g01103 289 MobiDBLite consensus disorder prediction 171 207 - -
Cma13g01103 289 SUPERFAMILY RNA-binding domain, RBD 206 287 IPR035979 GO:0003676
Cma13g01103 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cma13g01103 289 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Cma13g01103 289 Gene3D - 181 289 IPR012677 -
Cma13g01103 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Cma13g01103 289 CDD eIF3G 37 156 IPR024675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01103 Cma-Chr13:8280929 Cma14g00804 Cma-Chr14:4068116 0 dispersed
Cma13g01103 Cma-Chr13:8280929 Cma01g00390 Cma-Chr1:1965123 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01103 K03248 - csv:101212619 549.28