Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01111 ATGGGAACGGGACTACGGCGGAGCGTGAAGAACAGTCGCTGCCAGGCAAAGATGCGTGTCAATTCGGGAGAGCGAGTAGAGAAAGGGAGATTTAAAGGTATGGAGAGAAACGCCGCAGGGGATAGTGGGATGGTGGCGAAACCAAGGGCTTTTTCTCTCTCGGCTGTTCTTTATTATTACCTTTCTCTGGCTCTCTCGTTCTTTATAGCAACGCGAAGCGACGCTGCGGTTTCTGTGGCTCTCTGTTTGTTTCTTTTTTTCACTACTCATTTTCATCACATCGCTACCGGCGCTTTTCCGGCCACCATACTTGCTCGTCTGAGACATTATTTTTCAATTCTAACTTTTCGGGTTCAACTCTCCATTTTTGTAGTGATCATGGGGAGGAAGAAGAAAACTGACGGTGGTGGTGAAAGTTCTGAGTCTCAGGATGTTGGTGGCCGTGGCTCCCAACGATCAGCTGAAAGGAGAGATGGTCCACAGCAACACGGTGGAAGTGGATATCATGGTGGAAGAGGTTGGGCTTCTCAAGGGGGACGGGGAGGTCAAGGTGGTGGTCGTGGCCGAGGAACATCTCAACATCAGCACTACGGAGGACCTCCGGATTACCAAGGCAGGGGTAGAGGTGGACCATATCAGCATGGAGGACGCGGTAACTATGGTGGTAATCGCAGTGGCATGGGTGGTGGCGGCATTGGGGGAGGATCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTGTCAAGGTGGGGTGACTCAGCCAATGTCATCTCTGGCGAGTTCTTCCTCCCACCCACCCGACACTTCATCAATTGATCAGCAATTTCAACAAATTTCCATCCAGCAGGAATCTTCTCAAAGCCAAGCAATTCAATCTGCACCACCATCTAGTAAATCTATGAGATTCCCTTTGAGACCAGGAATGGGTAGCTCTGGAATAAGGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCGGACAAAGATCTTCATCAGTATGATGTTACTATTACTCCAGAAGTCACTTCACGTGTCTATAATCGAGCTGTAATGCAACAGCTAGTGAACTTATACAGGGTCTCTCACCTTGGTAATCGTCTTCCAGCCTATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATCACTCTTTTTGATGAAGAGGATGGATCAGGAGGACAAAGACGGGAAAGAGAATTTAAAGTTGTGATCAAATTGGCTGCTCGTGCTGATTTGCACCATTTAGGGCTCTTTCTGCAGGGCAGACAGGCGGATGCCCCACAGGAAGCCCTTCAAGTTCTGGATATTGTATTGCGCGAATTGCCTACTTCAAGGTATTGTCCAGTGGGCCGATCATTTTATTCTCCTGATCTTGGCAGACGTCAGACAATGGGTGAGGGGCTGGAAAGCTGGCGGGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGCCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAACCTTTGCCTGTCATTGATTTTGTGACTCAGCTTCTCAACCGTGATGTGTCATCGAGACCATTATCTGACGCTGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTTAAAGTTGAAGTGACACACCGTGGTAATATGCGCAGAAAATATCGCATAACTGGTTTGACATCACAAGCAACACGAGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAATCAGTGGTCGAGTACTTCTATGAAACATATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCCATGGAAGTTTGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATTACTGCTCTGCTCAAGGTTACATGCCAACGACCAAAAGATAGAGAGGAAGACATCATGCGGACGGTACGTCATAATGCATATCATGACGATCCATATGCCAACGAGTTTGGAATTAAGATAAGTGCTAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTGCACCATGGCTAAAATATCATGAGACCGGCAGAGAAAAGGATTGCTTGCCACAGGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGCATAAATTTCTCTCGATATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGATTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTGTATGGTGATTTAAAACGAATCTGTGAAACGGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAACGTAAAGGTTGGGGGAAGAAATACAGTACTTGTTGATGCATTATCTAGGCGCATACCCTTGGTTAGTGACCGCCCTACCATTATATTTGGTGCCGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTAACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTAAGGGGGACTGTAACGGGTGGAATGGTCAAGGAACTCCTCATCTCCTTCCGTAGAGCCACTGGACAGAAACCTCAGCGCATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTTTACCAAGTTTTATTGCATGAGCTGGATGCCATTCGAAAGGCATGCGCTTCTCTAGAACCAAACTACCAACCTCCAGTGACTTTTGTTGTTGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCACGCTGTTGACAAGAGTGGGAACATATTGCCTGGTACGGTAGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCAGCTCACTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGACAGATTGCAGACTCTAACCAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCTATTGTGCCCCCAGCCTACTACGCTCATCTTGCTGCATTCCGAGCTCGTTTTTATATGGAACCCGAGACTTCTGATAGCGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGTGGTGGTGGTGGTGGTGCTCGCAGCACACGGGCACCAGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTCAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3555 46.27 MGTGLRRSVKNSRCQAKMRVNSGERVEKGRFKGMERNAAGDSGMVAKPRAFSLSAVLYYYLSLALSFFIATRSDAAVSVALCLFLFFTTHFHHIATGAFPATILARLRHYFSILTFRVQLSIFVVIMGRKKKTDGGGESSESQDVGGRGSQRSAERRDGPQQHGGSGYHGGRGWASQGGRGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGPYQHGGRGNYGGNRSGMGGGGIGGGSSSGGPSRPPVPELHQATPVCQGGVTQPMSSLASSSSHPPDTSSIDQQFQQISIQQESSQSQAIQSAPPSSKSMRFPLRPGMGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMQQLVNLYRVSHLGNRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQTMGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRITGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMRTVRHNAYHDDPYANEFGIKISAKLASVEARILPAPWLKYHETGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVIPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMVKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADRLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGGGGGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8310637 8318329 - CmaCh13G011110.1 Cma13g01111 306938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01111 1184 CDD PAZ_argonaute_like 518 632 - -
Cma13g01111 1184 Gene3D - 697 872 - -
Cma13g01111 1184 Pfam PAZ domain 523 648 IPR003100 GO:0005515
Cma13g01111 1184 MobiDBLite consensus disorder prediction 131 314 - -
Cma13g01111 1184 PANTHER PROTEIN ARGONAUTE 1A 204 1183 - -
Cma13g01111 1184 Pfam Glycine-rich region of argonaut 198 304 IPR024357 -
Cma13g01111 1184 CDD Piwi_ago-like 677 1129 IPR045246 -
Cma13g01111 1184 SMART Piwi_a_2 809 1130 IPR003165 GO:0003676
Cma13g01111 1184 SMART PAZ_2_a_3 523 655 IPR003100 GO:0005515
Cma13g01111 1184 Gene3D paz domain 512 637 - -
Cma13g01111 1184 Pfam N-terminal domain of argonaute 324 457 IPR032474 -
Cma13g01111 1184 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 204 1183 - -
Cma13g01111 1184 SUPERFAMILY Ribonuclease H-like 804 1130 IPR012337 -
Cma13g01111 1184 SMART DUF1785_2 466 518 IPR014811 -
Cma13g01111 1184 MobiDBLite consensus disorder prediction 1134 1161 - -
Cma13g01111 1184 Gene3D - 878 1184 IPR036397 GO:0003676
Cma13g01111 1184 SUPERFAMILY PAZ domain 326 669 IPR036085 GO:0005515
Cma13g01111 1184 Pfam Argonaute linker 1 domain 467 517 IPR014811 -
Cma13g01111 1184 Pfam Piwi domain 810 1129 IPR003165 GO:0003676
Cma13g01111 1184 Pfam Mid domain of argonaute 716 791 IPR032473 -
Cma13g01111 1184 MobiDBLite consensus disorder prediction 255 307 - -
Cma13g01111 1184 ProSiteProfiles PAZ domain profile. 519 633 IPR003100 GO:0005515
Cma13g01111 1184 ProSiteProfiles Piwi domain profile. 809 1130 IPR003165 GO:0003676
Cma13g01111 1184 Pfam Argonaute linker 2 domain 659 705 IPR032472 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01363 Cma-Chr6:8906984 Cma13g01111 Cma-Chr13:8310637 0 dispersed
Cma11g00580 Cma-Chr11:2789527 Cma13g01111 Cma-Chr13:8310637 0 dispersed
Cma11g01937 Cma-Chr11:12741941 Cma13g01111 Cma-Chr13:8310637 6.91E-161 dispersed
Cma13g01111 Cma-Chr13:8310637 Cma14g01755 Cma-Chr14:12799089 0 dispersed
Cma20g00018 Cma-Chr20:43896 Cma13g01111 Cma-Chr13:8310637 7.90E-141 dispersed
Cma13g00269 Cma-Chr13:2215423 Cma13g01111 Cma-Chr13:8310637 0 transposed
Cma01g00767 Cma-Chr1:4130153 Cma13g01111 Cma-Chr13:8310637 0 wgd
Cma13g01111 Cma-Chr13:8310637 Cma18g01126 Cma-Chr18:9136002 0 wgd
Cma13g01111 Cma-Chr13:8310637 Cma04g01680 Cma-Chr4:8461210 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01111 K11593 - csv:101212130 1822.75