Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01112 ATGGGCGCAACACAACTGTTTGTTCTGTCTCTTATTTCCCTCACTCTCCTCTCCGCAGTTTCTTATTCAGAAGGCAATGGGCTGAAGATGAACGCCATTGACAGATGCTGGAGATCGAACCCGTACTGGAGGAGAAACAGGCAACAACTGGGCGTTTGCTCGGTGGGTTTCGTTGGAAAAATGACCAACAACATCGGAAGAAATCTCATACGCTACCAAGTCACCGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACACTCCGATACGGCGCCACAATGATCAAGTCCAAAGTCTGGATCACCTTCCAAAAAGGCATGCACATCCTCCTCCACAAGCCGCTTCTCATAAGCAGCTACACAGCCATCGACGGGCGAGGGGCCAGCGTCCACATCTCCGGGAATGCATGCCTGGTGGTCTCCAAGGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAAGGCTCAGGGCGCAGGCCAAGTCATGGGCCCTAATTCCAAGTTGGTTTCACTTGGACACGTGGACGGCGATGCCATTCGTTTAGTTTCAGCCTCCAAAGTCTGGATTGACCACAACACACTGTACCGCTGCGAGGATGGGCTGCTCGACGTCACCAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTCCGCGACCAAGACAAGATTGTATGGAGCACCGGGAAAGTAGAGGCGGCAAAATGGAAGTTTCATTCCGTAGGAGACGTTTTTGAAAATGGAGCTTCCTTTGAACAGATTGGTGTGGGGCGAGGAGGCGTAAAGCCAAATTACAGCGCCCAGCAGCGGTTTCCAGTGGCTGATGCTAAGTGGGAACCGGGGAAAGAAATGGCGCCAGTGGGGTTGCCTCCAGGGTTCAGGTTCCATCCCACCGATGAAGAGCTTGTCAATTACTATCTCAAGAGGAAGATCAGTGGCCAAGTAATCGAGCTTGATATCATTCCAGAGGTCGATCTCTACAAATGCGAGCCTTGGGAATTATCAGAAAAGTCGTTTCTGCCCAGTCGAGACCCGGAATGGTACTTCTTTGGGCCGAGAGATAGGAAGTATCCAAATGGGTTTAGAACAAACAGAGCCACGAGAGCGGGGTATTGGAAGTCAACTGGAAAAGACAGGCGAGTGACTTCTCATCAACGTGCCATTGGGATGAAAAAAACACTTGTTTACTATAGAGGCCGAGCCCCTCAAGGCATTAGGACCGACTGGGTCATGCATGAATATCGCCTGGACGACAAGGATTGTGAAGACAGCTCTGGTATTCAGGATTCTTACGCGTTGTGTAGAGTGTTCAAGAAAAATGGAATATGTTCGGAGGTGGAAGAACAATTGAGCGGGCAAAGCAGCAGCAGCAGTTTGTCATTTATAGACAACTCAAATTCAACATCACAAACTTTGGTCAATGATTACGAAACTTTATCCCCTGATGTTCTCATGCCACCACCTTCGTCATCTTGTGTCGAGGAAGAAGAAAAGGACGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTGTGCTTCCAATTCATCACCCATCGCCCTCCACGATCTCTCTCACCTCACTTTCACCACCCATTGA 1611 49.84 MGATQLFVLSLISLTLLSAVSYSEGNGLKMNAIDRCWRSNPYWRRNRQQLGVCSVGFVGKMTNNIGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKSKVWITFQKGMHILLHKPLLISSYTAIDGRGASVHISGNACLVVSKATNIIIHGLIIHHCKAQGAGQVMGPNSKLVSLGHVDGDAIRLVSASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKIVWSTGKVEAAKWKFHSVGDVFENGASFEQIGVGRGGVKPNYSAQQRFPVADAKWEPGKEMAPVGLPPGFRFHPTDEELVNYYLKRKISGQVIELDIIPEVDLYKCEPWELSEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTSHQRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDCEDSSGIQDSYALCRVFKKNGICSEVEEQLSGQSSSSSLSFIDNSNSTSQTLVNDYETLSPDVLMPPPSSSCVEEEEKDDSWMQFITEDAWCASNSSPIALHDLSHLTFTTH 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8320215 8324077 + CmaCh13G011120.1 Cma13g01112 306939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01112 536 Pfam Pectate lyase 120 229 IPR002022 -
Cma13g01112 536 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 278 534 - -
Cma13g01112 536 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Cma13g01112 536 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Cma13g01112 536 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Cma13g01112 536 SMART amb_all 107 281 IPR002022 -
Cma13g01112 536 Gene3D NAC domain 302 446 IPR036093 GO:0003677|GO:0006355
Cma13g01112 536 SUPERFAMILY Pectin lyase-like 30 228 IPR011050 -
Cma13g01112 536 ProSiteProfiles NAC domain profile. 293 443 IPR003441 GO:0003677|GO:0006355
Cma13g01112 536 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 278 534 - -
Cma13g01112 536 SUPERFAMILY NAC domain 289 443 IPR036093 GO:0003677|GO:0006355
Cma13g01112 536 Pfam No apical meristem (NAM) protein 294 420 IPR003441 GO:0003677|GO:0006355
Cma13g01112 536 Gene3D - 30 234 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02269 Cma-Chr4:15848115 Cma13g01112 Cma-Chr13:8320215 3.19E-88 dispersed
Cma13g01112 Cma-Chr13:8320215 Cma15g00766 Cma-Chr15:3763101 1.61E-88 dispersed
Cma01g00771 Cma-Chr1:4144385 Cma13g01112 Cma-Chr13:8320215 9.88E-158 transposed
Cma01g00769 Cma-Chr1:4141420 Cma13g01112 Cma-Chr13:8320215 8.69E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36149 PF02365 NAM 4.10E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01112 - - csv:101214224 452.21