Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01118 ATGATTCGGGCTTTCAGAGTGGGATACACAAGCATTTGGGTCTTTGATTTTCATCACACCCAACAAATAACTCACACCTCCACGGACTGCACCCCTTCTCCGCCTTCTTCTTATCCAATTTACGGACAATTCATTTGCGTCCAGTTTCCAAAATCCAAAAACATGTTGGAGGGTCCATCTTATCTCATCTCGAGGGACTTGCCTAGCTCTTGTGAACAAGAGAGCAAATGGGTTTATTACACTTTTCGTGTGATCGAAATGACACATAAGAAGCATCTCTTAGAAGATAGGGTTGAACCTTTAGCAAAAAAATCATGCAAGTTGCCAGATGATGCTCACAATCGAGGGGAGGATGTACATGAGTTCTTAGTTGACGATCAGGATAAACAGCATTGTGGTGGAGACCAGTCGGATTCAGGTTCGCTGATCCACCAACTTGGTCGGGATATGTCAATAAATTGTCTCCTCCACTGCTCAAGATCAGAATACGGTTCGATTGCCTCTCTAAATCGAGGTTTCCGATCTCTTATTACGAGTGGTGAACTTTATAAACTGCGGAGGCAGATGGGCATCATTGAACATTGGATTTACTTCTCCTGCAGCCTTCTTGAATGGGATGCATACGATCCAAACTCTAACCGTTGGATGCGTCTGCCTATAATGGCATCAAACGAGTGTTTCATGTCTTCAGACAAGGAGTCATTGGCTGTTGGGACTGAACTTTTAGTTTTTGGGAAGGAAACAATTTCCCAAGTTATATATAGATATAGTATTTTAAATAACACATGGTCATCTGGGATGAAAATGAATGCACCCAGGTTTCTTTTTGGTTCTGCTAGTCTTGGTGAAATTGCAATTCTAGCAGGTGGTTGTGACCCACAAGGGAATCTCCTGAACTCAGCTGAGCTTTATAATTCTGAGACAGGAACTTGGGTCACTCTTCCTAGAATGAACAAAGCACGGAAAATGTGCTCAGCAGTATTTCTTGAGGGAAAGTTCTATGTGATTGGTGGAACTGGGGCAGGTAATACCACTCTTACTTGTGGTGAAGAATATGATTTGAAGACTCGGACCTGGCGTGAGATACCTAACATGTATCCTGGACGAAATGCTGGAGATGGGGCTGCTGTGCCGGTTGCTGCTGTTGAGGCACCTCCTTTGGTTGCAGTTATAAACGATAAGTTGTATGCTGCCGATTATGCACATAGGGAGGTTAAAAGATATGACAAGGCAAGACAATTGTGGGTGGCAGTAGGGCGATTGCCCGAGCGTGTGGTCTCAACAAATGGTTGGGGGTTGGCATTCAGGGCTTGTGGAGATCGACTCATCGTCATTGGTGGACCGAGGGCTTTAGGTGGACGTATGATTGAGATATATTCTTGGGCCCCAGATCAAGGGCAGCTGCATTGGGGTGTGCTTGCCAGCAGGCAGTTAGGTAATTTTGTGTATAACTGTGCAGTGATGGGATGCTGA 1473 44.81 MIRAFRVGYTSIWVFDFHHTQQITHTSTDCTPSPPSSYPIYGQFICVQFPKSKNMLEGPSYLISRDLPSSCEQESKWVYYTFRVIEMTHKKHLLEDRVEPLAKKSCKLPDDAHNRGEDVHEFLVDDQDKQHCGGDQSDSGSLIHQLGRDMSINCLLHCSRSEYGSIASLNRGFRSLITSGELYKLRRQMGIIEHWIYFSCSLLEWDAYDPNSNRWMRLPIMASNECFMSSDKESLAVGTELLVFGKETISQVIYRYSILNNTWSSGMKMNAPRFLFGSASLGEIAILAGGCDPQGNLLNSAELYNSETGTWVTLPRMNKARKMCSAVFLEGKFYVIGGTGAGNTTLTCGEEYDLKTRTWREIPNMYPGRNAGDGAAVPVAAVEAPPLVAVINDKLYAADYAHREVKRYDKARQLWVAVGRLPERVVSTNGWGLAFRACGDRLIVIGGPRALGGRMIEIYSWAPDQGQLHWGVLASRQLGNFVYNCAVMGC 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8343049 8346874 + CmaCh13G011180.1 Cma13g01118 306945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01118 490 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 55 490 - -
Cma13g01118 490 Pfam Kelch motif 320 365 IPR006652 GO:0005515
Cma13g01118 490 Pfam Kelch motif 272 318 IPR006652 GO:0005515
Cma13g01118 490 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 55 490 - -
Cma13g01118 490 SMART kelc_smart 284 331 IPR006652 GO:0005515
Cma13g01118 490 SMART kelc_smart 240 283 IPR006652 GO:0005515
Cma13g01118 490 SMART kelc_smart 332 379 IPR006652 GO:0005515
Cma13g01118 490 SUPERFAMILY Kelch motif 202 487 IPR015915 GO:0005515
Cma13g01118 490 Gene3D - 184 480 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01118 - - - csv:101215424 814.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00544 Cma-Chr1:2836315 Cma13g01118 Cma-Chr13:8343049 8.96E-113 dispersed
Cma04g01646 Cma-Chr4:8308596 Cma13g01118 Cma-Chr13:8343049 5.34E-172 dispersed
Cma13g01118 Cma-Chr13:8343049 Cma18g01163 Cma-Chr18:9312458 1.41E-165 dispersed
Cma01g00776 Cma-Chr1:4194558 Cma13g01118 Cma-Chr13:8343049 3.21E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g528 Blo04g00765 . . . . . . . Cmo13g01169 . . . . . . Cpe20g00034 . . . . . . . . . . . . . . . . Cone16ag0157 . Cone19ag0082 Lsi02g00055 Csa01g00528 Chy12g01559 Cme12g02013 . . . Bda14g00843 . Bpe15g00608 Bma03g00821 . . . . Cma13g01118 . Car13g00952 . . . . . . . . . . Cla04g01214 Cam04g1280 Cec01g1789 Cco01g1835 Clacu04g1309 Cmu04g1284 Cre01g1575 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008261 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01118 Cma_Chr13 FPKM 7.340667 7.386917 5.931977 5.806843 7.711619 8.308743 9.217356 3.562251 4.145361 4.111732