Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01122 ATGGAAGGAAGCGACCAAATTCACTATCATCATCGTCCGCCTGCTTCGTTTCCTCTCCAATTGTTGGAGAAGAAGGAATACGATCCCCAGCCGCCTCCCGAGTCGTCTAAGAGGCCCTCGCCCAAGAGGGCCTCCACCAAAGACCGCCACACCAAAGTCGATGGCCGCGGCCGCCGTACCCGGATGCCTGCGCTTTGTGCTGCTAGAGTTTTCCAGCTCACCCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTTCTTCAACAGGCCGAGCCTGCCGTTATCGCTGCCACTGGCACCGGCACAATTCCGGCCAACTTTAACTCCCTCAATACCTCCTTAAGAAGATCGGCCACCAGCATTTCCTTACCATCTCAACTAAGATCCTCATCTTACTATCACCCCGGAGTGGTGGCGTTCAACTCTCAACCAATGAATATGGGTCCAATGGCGCATGCAAAAGAAGATCACTTGCCTGACCCGCAGCGGAGCTACGTGCAGCAATCCACCACAGGGCTACTCCCGACGACTATTCCGGCCAACTTTTGGATGTTCTCCGATGGCAACAACCAATTACTCAGCGGCGGAGGTGACTCTCTATGGAGGCTTCCACCGGCCAACCAAGACAACGCTTTATACAGAGGACAAGCCTCCGGTAGTGTTCGTTTCTCGAATCTGGCTGCTCCATTGACGCTTCTCCCCGGAAAGCCATTGGGTCCCAGTGGCAGCGGTGGAAGCATGAACGATGGACATCTGAATATCTACGGCGGCCAAAATAGGGCGCATGGGGCGGCTCCGGACAACAGTGTCTCATAA 825 55.52 MEGSDQIHYHHRPPASFPLQLLEKKEYDPQPPPESSKRPSPKRASTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVVAFNSQPMNMGPMAHAKEDHLPDPQRSYVQQSTTGLLPTTIPANFWMFSDGNNQLLSGGGDSLWRLPPANQDNALYRGQASGSVRFSNLAAPLTLLPGKPLGPSGSGGSMNDGHLNIYGGQNRAHGAAPDNSVS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8356359 8357660 - CmaCh13G011220.1 Cma13g01122 306949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01122 274 Pfam TCP family transcription factor 45 144 IPR017887 -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP23 167 263 - -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP23 30 143 - -
Cma13g01122 274 MobiDBLite consensus disorder prediction 240 274 - -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 143 IPR005333 GO:0003700
Cma13g01122 274 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Cma13g01122 274 MobiDBLite consensus disorder prediction 1 60 - -
Cma13g01122 274 MobiDBLite consensus disorder prediction 40 59 - -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 167 263 IPR005333 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00186 Cma13g01122 CCT
Cma10g00186 Cma13g01122 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01520 Cma-Chr11:9944628 Cma13g01122 Cma-Chr13:8356359 1.24E-38 dispersed
Cma13g01122 Cma-Chr13:8356359 Cma18g01160 Cma-Chr18:9296551 1.47E-53 dispersed
Cma10g00186 Cma-Chr10:850757 Cma13g01122 Cma-Chr13:8356359 1.03E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36152 PF03634 TCP 1.80E-35 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01122 - - csv:101218047 339.347