Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01122 ATGGAAGGAAGCGACCAAATTCACTATCATCATCGTCCGCCTGCTTCGTTTCCTCTCCAATTGTTGGAGAAGAAGGAATACGATCCCCAGCCGCCTCCCGAGTCGTCTAAGAGGCCCTCGCCCAAGAGGGCCTCCACCAAAGACCGCCACACCAAAGTCGATGGCCGCGGCCGCCGTACCCGGATGCCTGCGCTTTGTGCTGCTAGAGTTTTCCAGCTCACCCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTTCTTCAACAGGCCGAGCCTGCCGTTATCGCTGCCACTGGCACCGGCACAATTCCGGCCAACTTTAACTCCCTCAATACCTCCTTAAGAAGATCGGCCACCAGCATTTCCTTACCATCTCAACTAAGATCCTCATCTTACTATCACCCCGGAGTGGTGGCGTTCAACTCTCAACCAATGAATATGGGTCCAATGGCGCATGCAAAAGAAGATCACTTGCCTGACCCGCAGCGGAGCTACGTGCAGCAATCCACCACAGGGCTACTCCCGACGACTATTCCGGCCAACTTTTGGATGTTCTCCGATGGCAACAACCAATTACTCAGCGGCGGAGGTGACTCTCTATGGAGGCTTCCACCGGCCAACCAAGACAACGCTTTATACAGAGGACAAGCCTCCGGTAGTGTTCGTTTCTCGAATCTGGCTGCTCCATTGACGCTTCTCCCCGGAAAGCCATTGGGTCCCAGTGGCAGCGGTGGAAGCATGAACGATGGACATCTGAATATCTACGGCGGCCAAAATAGGGCGCATGGGGCGGCTCCGGACAACAGTGTCTCATAA 825 55.52 MEGSDQIHYHHRPPASFPLQLLEKKEYDPQPPPESSKRPSPKRASTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVVAFNSQPMNMGPMAHAKEDHLPDPQRSYVQQSTTGLLPTTIPANFWMFSDGNNQLLSGGGDSLWRLPPANQDNALYRGQASGSVRFSNLAAPLTLLPGKPLGPSGSGGSMNDGHLNIYGGQNRAHGAAPDNSVS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8356359 8357660 - CmaCh13G011220.1 Cma13g01122 306949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01122 274 Pfam TCP family transcription factor 45 144 IPR017887 -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP23 167 263 - -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP23 30 143 - -
Cma13g01122 274 MobiDBLite consensus disorder prediction 240 274 - -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 143 IPR005333 GO:0003700
Cma13g01122 274 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Cma13g01122 274 MobiDBLite consensus disorder prediction 1 60 - -
Cma13g01122 274 MobiDBLite consensus disorder prediction 40 59 - -
Cma13g01122 274 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 167 263 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01122 - - - csv:101218047 339.347
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00186 Cma13g01122 CCT
Cma10g00186 Cma13g01122 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01520 Cma-Chr11:9944628 Cma13g01122 Cma-Chr13:8356359 1.24E-38 dispersed
Cma13g01122 Cma-Chr13:8356359 Cma18g01160 Cma-Chr18:9296551 1.47E-53 dispersed
Cma10g00186 Cma-Chr10:850757 Cma13g01122 Cma-Chr13:8356359 1.03E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00788 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.9e-65 245.0
Cma04g01259 . 36 250 TCP Transcription Factor Family AT5G23280 61.8 2.2e-64 243.0
Cma04g02246 . 74 303 TCP Transcription Factor Family AT5G23280 59.9 9.4e-63 237.7
Cma18g00810 . 33 230 TCP Transcription Factor Family AT5G23280 57.6 2.6e-57 219.5
Cma04g01649 CCT,ECH 60 154 TCP Transcription Factor Family AT3G47620 88.7 5.7e-40 162.9
Cma13g01122 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.2e-39 161.0
Cma04g01856 . 129 211 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cma04g01856 . 129 221 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cma14g00730 . 49 316 TCP Transcription Factor Family AT3G27010 58.8 8.4e-61 231.5
Cma11g01520 . 32 276 TCP Transcription Factor Family AT3G27010 54.4 7.6e-54 208.4
Cma17g01429 . 37 254 TCP Transcription Factor Family AT3G27010 52.8 8.2e-48 188.3
Cma15g00788 . 10 255 TCP Transcription Factor Family AT5G08330 60.0 8.1e-64 241.1
Cma04g02246 . 40 302 TCP Transcription Factor Family AT5G08330 57.5 5.2e-63 238.4
Cma04g01259 . 8 248 TCP Transcription Factor Family AT5G08330 56.0 2.0e-62 236.5
Cma18g00810 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 3.0e-58 222.6
Cma11g00212 CCT 31 173 TCP Transcription Factor Family AT5G60970 58.6 1.6e-39 161.0
Cma14g01163 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 1.9e-37 154.1
Cma11g01924 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36152 PF03634 TCP 1.80E-35 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01122 Cma_Chr13 FPKM 0.271008 0.0 0.0 0.0 11.093036 10.328602 9.470551 0.439586 0.323013 0.334869