Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g01122 | ATGGAAGGAAGCGACCAAATTCACTATCATCATCGTCCGCCTGCTTCGTTTCCTCTCCAATTGTTGGAGAAGAAGGAATACGATCCCCAGCCGCCTCCCGAGTCGTCTAAGAGGCCCTCGCCCAAGAGGGCCTCCACCAAAGACCGCCACACCAAAGTCGATGGCCGCGGCCGCCGTACCCGGATGCCTGCGCTTTGTGCTGCTAGAGTTTTCCAGCTCACCCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTTCTTCAACAGGCCGAGCCTGCCGTTATCGCTGCCACTGGCACCGGCACAATTCCGGCCAACTTTAACTCCCTCAATACCTCCTTAAGAAGATCGGCCACCAGCATTTCCTTACCATCTCAACTAAGATCCTCATCTTACTATCACCCCGGAGTGGTGGCGTTCAACTCTCAACCAATGAATATGGGTCCAATGGCGCATGCAAAAGAAGATCACTTGCCTGACCCGCAGCGGAGCTACGTGCAGCAATCCACCACAGGGCTACTCCCGACGACTATTCCGGCCAACTTTTGGATGTTCTCCGATGGCAACAACCAATTACTCAGCGGCGGAGGTGACTCTCTATGGAGGCTTCCACCGGCCAACCAAGACAACGCTTTATACAGAGGACAAGCCTCCGGTAGTGTTCGTTTCTCGAATCTGGCTGCTCCATTGACGCTTCTCCCCGGAAAGCCATTGGGTCCCAGTGGCAGCGGTGGAAGCATGAACGATGGACATCTGAATATCTACGGCGGCCAAAATAGGGCGCATGGGGCGGCTCCGGACAACAGTGTCTCATAA | 825 | 55.52 | MEGSDQIHYHHRPPASFPLQLLEKKEYDPQPPPESSKRPSPKRASTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVVAFNSQPMNMGPMAHAKEDHLPDPQRSYVQQSTTGLLPTTIPANFWMFSDGNNQLLSGGGDSLWRLPPANQDNALYRGQASGSVRFSNLAAPLTLLPGKPLGPSGSGGSMNDGHLNIYGGQNRAHGAAPDNSVS | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8356359 | 8357660 | - | CmaCh13G011220.1 | Cma13g01122 | 306949 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g01122 | 274 | Pfam | TCP family transcription factor | 45 | 144 | IPR017887 | - | |
Cma13g01122 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 167 | 263 | - | - | |
Cma13g01122 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 30 | 143 | - | - | |
Cma13g01122 | 274 | MobiDBLite | consensus disorder prediction | 240 | 274 | - | - | |
Cma13g01122 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 30 | 143 | IPR005333 | GO:0003700 | |
Cma13g01122 | 274 | ProSiteProfiles | TCP domain profile. | 46 | 100 | IPR017887 | - | |
Cma13g01122 | 274 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cma13g01122 | 274 | MobiDBLite | consensus disorder prediction | 40 | 59 | - | - | |
Cma13g01122 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 167 | 263 | IPR005333 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00186 | Cma13g01122 | CCT | |
Cma10g00186 | Cma13g01122 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01520 | Cma-Chr11:9944628 | Cma13g01122 | Cma-Chr13:8356359 | 1.24E-38 | dispersed | |
Cma13g01122 | Cma-Chr13:8356359 | Cma18g01160 | Cma-Chr18:9296551 | 1.47E-53 | dispersed | |
Cma10g00186 | Cma-Chr10:850757 | Cma13g01122 | Cma-Chr13:8356359 | 1.03E-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36152 | PF03634 | TCP | 1.80E-35 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g01122 | - | - | csv:101218047 | 339.347 |