Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01126 ATGGCGACGTCAGGACAGTGGCTGGAGAAGGCGTTGGACGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTTGATAAGGATATGATTTCGGGATTGGTCTCGTATTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTACCTTGATAACATCATAGGTCAGGAAGTTGGGAAAAGTGTGATAGATGAGTATTTACGCCTGCGAGGCTACTCTGACCCCTGCAGCAAAACATTGGATGTTCCAACGTCAAACTTACACGCCTATGTCAAGCCACCCTCCCATGAAGGTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGTCGCCAGCTCTAGTAAGGTGGAAAACCAGGTTTCATCGGACACTCGCAACTCATTGTCTGGTAAAGGGAATCAGGGTACTTCCAAAAAGAAGAAGGCTGCCAAAGCTGTTTCTCTGGCTGAAGCTGCCAAAGGATCATTTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGGCTAGTAAGCAATTGTTTATCATGTGGCAAGATTGTATGTGAGCAAGAGGGAGAAGGGCCATGCAGTTTTTGTGGTTCCCTTGTTCTGAGAGAAGGGAGCACGTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCCAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGGACATCTGTAATTGATGATCAAAGTGATTATTACCAGATTGAGGGCAACAACTGGTTGTCTATCGAGGAAAAGGAACTTTTGAGAAAGAAACAAGAGGAAATTGAAGAGGCTGAGCGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATACTTCTGAACTTGAATCGCGCAACAGTATCTTGCGGCCACCAGATGAAAGAGAAGTGAACAGGATTAAACCAAACCCATCTCTTCAAATACATCCCGTCTTTTTAGATCCAGGCCCCAGAGAGAAATCCACCAAACCCAGAAACTCAAACAGAACCGGAAGCAATGGCATTTGCCTTGAAATTACTGGAAGAGTGCAGCATGATAGCAAGGAATTAAAGAACTTTATGGTGGAAAATGAGTTGGAAACGTCATTCAATAGGAAAGCTTGGCAAGGGCCTTCGGTAAATCACAGGCCGCAATTGCAGGACAATTATGAATGTTCTTTAGATGCTCGTTGA 1290 44.65 MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDNIIGQEVGKSVIDEYLRLRGYSDPCSKTLDVPTSNLHAYVKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKVASSSKVENQVSSDTRNSLSGKGNQGTSKKKKAAKAVSLAEAAKGSFVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNNWLSIEEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDTSELESRNSILRPPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKPRNSNRTGSNGICLEITGRVQHDSKELKNFMVENELETSFNRKAWQGPSVNHRPQLQDNYECSLDAR 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8369626 8372942 - CmaCh13G011260.1 Cma13g01126 306953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01126 429 MobiDBLite consensus disorder prediction 90 155 - -
Cma13g01126 429 Coils Coil 275 302 - -
Cma13g01126 429 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 2 428 IPR039128 -
Cma13g01126 429 MobiDBLite consensus disorder prediction 319 339 - -
Cma13g01126 429 Pfam Putative zinc finger motif, C2HC5-type 176 216 IPR009349 GO:0005634|GO:0006355|GO:0008270
Cma13g01126 429 PANTHER TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN 2 428 - -
Cma13g01126 429 Coils Coil 231 251 - -
Cma13g01126 429 MobiDBLite consensus disorder prediction 319 374 - -
Cma13g01126 429 MobiDBLite consensus disorder prediction 126 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01126 K23398 TRIP4; activating signal cointegrator 1 - csv:101216786 694.886
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g541 . . . . . Bpe13g00288 . . Cmo13g01180 . . . . . . Cpe20g00023 . . . . . . . . . . . . . . . . Cone16ag0162 . . Lsi02g00067 . . . . . . . . . . . . . . Cma13g01126 . Car13g00961 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014705 0 1 0 0 1 1 1 0 0 0 0 0 1 0 2 1 0 1 1 0 0 1 1 1 1 0 1 2 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01126 Cma_Chr13 FPKM 19.289604 19.912212 32.943321 32.732662 16.928728 14.986605 15.719163 51.395565 51.389099 49.814667