Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01128 ATGAATTTTACTGGGATTCCAACTTTCGTAAATAAAACACTGTTATCCCAACGTAGATTGATTTCCTCCGTCGCTACTGTAGACAATGCGTCCAGTTTTTCCTTCACCAAAATTGAAACTTACCCTCTTTTCGACCCTTCGCAGTTGCTCAGCGATTATGTAAAATCCAGAAAATGCTCTTTGAGGCACACCAAAGTTCTACATGCCAAGTTACTCCGAGCAACTCTTCTTCATTCCAATATCTATGTTTCAAATTCTTTGCTGGATTGCTACTCAAAGTCTAACTCTCTGGACCATGCACTCAAGCTGTTTGATACAATGCTCCACCCAAATGTCATTTCTTGGAATATCCTTATCTCCAGTTTCAACCACAACTTCTTGTATTTGGATTCGTGGAGAACATTTTGCAGGATGCATTTCCTGGGTTTTGAACCCAGCGAGATAACATATGGGAGTGTTTTATCTGCTTGTGCTGCCATTCAAGCCCCAATGTTTGGTAAGCAGGTCTATTCACTTGCTGTGAGAAATGGGTTTTTTGTTAATGGTTATGTTCGAGCAGGGATGATCGATTTGTTTGCAAAAGAGTCTAGTTTTCTGGATGCTCTAAGGGTGTTTCAAGATGTTGATTGTGAGAATGTGGTGTGCTGGAATGCTATTGTGTCCGCAGCTGTAAGGAATGGGGAGAATTTTATGGCTTTGGATCTTTACAACACAATGTGTCGTGGGTTTTTGGAGCCTAATAGTTTCACGTTTTCTAGTGTTCTAACTGCGTGTGCTGCACTTGAACATCCTGAATTTGGGAAAAGAGTTCAGGGGAAAGTGATTAAATGTGGCGGAGAAGATGTTTTTGTAGAGACAGCCCTCATTGATTTGTATAGCAAGTGTGGAGAAATGGATGAAGCTGTTAAAATATTCTTGCGGATGCCCATTCGCAATGTGGTCTCATGGACTGCCATAATATCTGGTTTTGTGCAGAAGAATGATTACTTAATGGCCCTCAAGTTTTTCAAAGATATGAGAAAATTGGGGGAGGAAATCAATAGCTATACAGTCACTAGCGTGTTAACTGCATGTGCTAATCCAGCCATGACAAAAGAAGCAATCCAACTCCACTCCTGGATTTTAAGAGCTGGTTTTTCATCCCATGCGGTGGTGGGAGCTGCTTTAATTAACATGTATTCGAAAATAGGAGCTATTGATCTTTCTATGACTGTTTTCGGAGAGATGGACAATCAAAGGAATCTCAGTTCTTGGACAGCTATGATTACCTCATTTGCACAGAACAATGATAAAGAGAAAGCAAGTGAATTGTTCCAAAAAATGTTACGGGAAAGTATGGGACCAGATACATTTTGCACCTCTAGTGTCTTGAGTGTGACCGACTGTATTACCTTTGGGAGACAGATTCACTGCTTCACGCATAAAACTGGATTAGTATTTGGCATTTCTGTTGGCAGTGCTCTTTTCACAATGTATTCCAAATGTGGCTATCTAGAGGAAGCTTTTCATGTTTTTAAAAACATGCCAAAGAAGGACCATATTTCATGGGCATCGATGATGTCCTGTTTCTCAGAACATGGTTATGCAAAAGAGGGCATCCAATTATTTAGAGAAATGTTGTTTGAAGAATATGTTCCTGATTCTATGATTTTAAATACAGTCCTAAATGCATGTTCTGTTCTTCATTCTATTCAAATAGGCAGAGAGATTCATAGTTATTCTGTTCGTTTGGGTCTTGACAAAGATGTAGCTATTGGGGGTTCGCTTGTGACTATGTACTCAAAATGCGGCAACCTGGAGATGGCTCGGAGGGTGTTTGAAACATTGCCCGAGAAAGATAATATTGCATGCTCTTCGTTGGTTTCAGGATATGCTCAACACAAGTGCATCAAAGAGACAATTTTGCTATTCCAAGATCTACTGGAGGCTGGCTTAGCCATCGATCCCTTTTCAATCTCATCCATACTGGGTGCAATTGCGCTTTTAAATAGGCCTGGTATTGGGACTCAACTCCATGCAATCATTACGAAAGTAGGCTTGGAGAAAGATGTTTCTATTGGGAGTTCGCTAGTAATGGTATACTCCAAATGTGGAAGCATAGAAGACTGCTGCAAAGCATTTGAGCAGATTGGAAAGCCTGATTTGATAGGTTGGACAGCCATGATTGTGAGTTATGCCCAGCATGGGAAAGGTGCTGAAGCTTTATGTGTCTATGAACTTATGAAGAAAGAAGGAATCAAGCCTGATCCAGTCACCTTTGTTGGGGTTTTGTCTGCTTGTAGCCATAATGGTTTGGTGGATGAAGCTTATTTCCACCTTAATTCGATGGTGAAAGACTATGGTATACAACCGGGACATCGACATTATGCTTGTATGGTAGATCTTCTTGGTCGGTGTGGGCAACTGAAAAGGGCAGAAGAACTGATTAACAATATGCCTATTGAACCTGATGCTCTCATTTGGGGAACTCTTCTCGCTGCCTGTAAAGTACATGGAGATATTGAACTTGGAAAACTAGCGGCAAGAAAGGTCATGGAGTTGAAGCCAAGTGACACTGGGGCTTATGTCTCTCTTTCCAACATCTGTGCTGATATGGGCCTGTGGGAAGAGGTCCTGAACGTTAGAAGCCATATGAAGGGAGCTGGAGTGACGAAGGAACCTGGTTGGAGCTTGCTGTAA 2679 41.4 MNFTGIPTFVNKTLLSQRRLISSVATVDNASSFSFTKIETYPLFDPSQLLSDYVKSRKCSLRHTKVLHAKLLRATLLHSNIYVSNSLLDCYSKSNSLDHALKLFDTMLHPNVISWNILISSFNHNFLYLDSWRTFCRMHFLGFEPSEITYGSVLSACAAIQAPMFGKQVYSLAVRNGFFVNGYVRAGMIDLFAKESSFLDALRVFQDVDCENVVCWNAIVSAAVRNGENFMALDLYNTMCRGFLEPNSFTFSSVLTACAALEHPEFGKRVQGKVIKCGGEDVFVETALIDLYSKCGEMDEAVKIFLRMPIRNVVSWTAIISGFVQKNDYLMALKFFKDMRKLGEEINSYTVTSVLTACANPAMTKEAIQLHSWILRAGFSSHAVVGAALINMYSKIGAIDLSMTVFGEMDNQRNLSSWTAMITSFAQNNDKEKASELFQKMLRESMGPDTFCTSSVLSVTDCITFGRQIHCFTHKTGLVFGISVGSALFTMYSKCGYLEEAFHVFKNMPKKDHISWASMMSCFSEHGYAKEGIQLFREMLFEEYVPDSMILNTVLNACSVLHSIQIGREIHSYSVRLGLDKDVAIGGSLVTMYSKCGNLEMARRVFETLPEKDNIACSSLVSGYAQHKCIKETILLFQDLLEAGLAIDPFSISSILGAIALLNRPGIGTQLHAIITKVGLEKDVSIGSSLVMVYSKCGSIEDCCKAFEQIGKPDLIGWTAMIVSYAQHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGHRHYACMVDLLGRCGQLKRAEELINNMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELKPSDTGAYVSLSNICADMGLWEEVLNVRSHMKGAGVTKEPGWSLL 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8377279 8379957 - CmaCh13G011280.1 Cma13g01128 306955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Cma13g01128 892 Pfam PPR repeat 417 444 IPR002885 -
Cma13g01128 892 Pfam PPR repeat 588 612 IPR002885 -
Cma13g01128 892 Pfam PPR repeat 616 645 IPR002885 -
Cma13g01128 892 Pfam PPR repeat 487 512 IPR002885 -
Cma13g01128 892 Pfam PPR repeat 514 540 IPR002885 -
Cma13g01128 892 Pfam PPR repeat 85 108 IPR002885 -
Cma13g01128 892 Pfam PPR repeat 789 812 IPR002885 -
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Cma13g01128 892 Pfam PPR repeat family 713 761 IPR002885 -
Cma13g01128 892 Pfam PPR repeat family 110 158 IPR002885 -
Cma13g01128 892 Pfam PPR repeat family 212 259 IPR002885 -
Cma13g01128 892 Pfam PPR repeat family 311 360 IPR002885 -
Cma13g01128 892 Pfam E motif 831 890 IPR046848 -
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 777 885 IPR011990 GO:0005515
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 784 IPR002885 -
Cma13g01128 892 PANTHER - 413 648 - -
Cma13g01128 892 PANTHER - 563 891 - -
Cma13g01128 892 PANTHER - 245 459 - -
Cma13g01128 892 PANTHER - 366 559 - -
Cma13g01128 892 PANTHER - 47 371 - -
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 665 776 IPR011990 GO:0005515
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 364 467 IPR011990 GO:0005515
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 311 IPR002885 -
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 29 167 IPR011990 GO:0005515
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 277 363 IPR011990 GO:0005515
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 563 664 IPR011990 GO:0005515
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 168 265 IPR011990 GO:0005515
Cma13g01128 892 Gene3D Tetratricopeptide repeat domain 468 562 IPR011990 GO:0005515
Cma13g01128 892 TIGRFAM PPR: pentatricopeptide repeat domain 286 312 IPR002885 -
Cma13g01128 892 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Cma13g01128 892 TIGRFAM PPR: pentatricopeptide repeat domain 85 108 IPR002885 -
Cma13g01128 892 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Cma13g01128 892 TIGRFAM PPR: pentatricopeptide repeat domain 113 147 IPR002885 -
Cma13g01128 892 TIGRFAM PPR: pentatricopeptide repeat domain 718 749 IPR002885 -
Cma13g01128 892 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Cma13g01128 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01128 - - - bhj:120082449 1578.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01128 Cma-Chr13:8377279 Cma18g01233 Cma-Chr18:9689109 2.07E-102 dispersed
Cma13g01128 Cma-Chr13:8377279 Cma07g00774 Cma-Chr7:3479064 8.19E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01128 Cma_Chr13 FPKM 0.543113 0.560177 0.309733 0.536177 1.329617 1.686145 1.62287 0.700153 1.118691 0.976888