Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01129 ATGGGAGAGGAAAGCTCATTGGTGCTTCATGGAATGTGGGCTAGTCCTTTCGGGAAAAGGGTGGAATTTGCCCTTAAAATCAAAGGCATCCCTTTCGAATATGTGGAAGAAGATCTGCAGAACAAGAACCCATCAACCCTCCTGAAATACAACCCTGTTTACAAGAAAGCCCCCGTGCTTGTCCACAATGGCAACCCCATTTCCGAATCACTTGTGATTCTCGAGTACATAGAAGAAACGTGGAAAAATCATGGCCCTGCCCTTCTGCCTCAAGATCCCTACGAACGAGCCCAGCTTCGGTTCTGGGCTGATTTCATTAACAAACAGTTGTTCGAGGCATCGGTTAAGGTAGTGATGGCGGCAGGGGAAGCACTAGAGAAGGCGATTAAAGACTTGAGAGAGAAGCTCAAAGTGGTTGAAGAGCATGGGGTTAAGAGGCTATTGGGAGATGGAAGTGGACCATTTGCGAACGGACAGGAAGTGGGGTTTGTGGACATAGTAATGTGGTCTGTTCTTGGAGCTTACAAGATCCACGAAGAGATCTTGGGGGTCAAAATTATAGACGAAGAGGAGACCCCCGGCGTGGCCTCATGGCTCAACTCCCTCATACACCATCCTCTTACCAAGGACATCTTACCTTCAAAGGACAAGGTTGTGGGGCTTCTTCAGTACGTTAGGCACAGGCCCTTAAACTCCTCTGCTGCTGCTTGA 711 48.66 MGEESSLVLHGMWASPFGKRVEFALKIKGIPFEYVEEDLQNKNPSTLLKYNPVYKKAPVLVHNGNPISESLVILEYIEETWKNHGPALLPQDPYERAQLRFWADFINKQLFEASVKVVMAAGEALEKAIKDLREKLKVVEEHGVKRLLGDGSGPFANGQEVGFVDIVMWSVLGAYKIHEEILGVKIIDEEETPGVASWLNSLIHHPLTKDILPSKDKVVGLLQYVRHRPLNSSAAA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8380382 8381372 + CmaCh13G011290.1 Cma13g01129 306956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01129 236 SFLD Glutathione Transferase (cytosolic) 4 231 IPR040079 -
Cma13g01129 236 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 228 IPR045073 -
Cma13g01129 236 Coils Coil 122 142 - -
Cma13g01129 236 CDD GST_C_Tau 93 223 IPR045074 GO:0004364|GO:0006749
Cma13g01129 236 SFLD Main.3: Omega- and Tau-like 4 231 IPR045073 -
Cma13g01129 236 CDD GST_N_Tau 7 81 - -
Cma13g01129 236 SUPERFAMILY GST C-terminal domain-like 79 226 IPR036282 -
Cma13g01129 236 SUPERFAMILY Thioredoxin-like 7 110 IPR036249 -
Cma13g01129 236 PANTHER GLUTATHIONE S-TRANSFERASE 1 228 - -
Cma13g01129 236 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 221 IPR010987 -
Cma13g01129 236 Gene3D Glutaredoxin 2 88 - -
Cma13g01129 236 Gene3D - 89 232 - -
Cma13g01129 236 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Cma13g01129 236 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 85 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01129 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - cmos:111431396 443.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01129 Cma-Chr13:8380382 Cma18g01154 Cma-Chr18:9264619 2.85E-58 dispersed
Cma13g01129 Cma-Chr13:8380382 Cma13g01130 Cma-Chr13:8381645 8.14E-105 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01129 Cma_Chr13 FPKM 38.920479 40.661961 0.0 0.0 4.133079 3.550797 3.354454 0.0 0.0 0.069454