Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01130 ATGGCAGAGCAAAACAGAGTGGTGCTTCATGGGATGTGGGCGAGCCCTTTTGCGAAGAGGGTCGAACTCGCCCTCAAAATCAAAGGCATCCCTTTTGAGTATGTGGAGGAAGATATCCAGAACAAAAGCCCAGAGCTTGCTAAGCTCAATCCTGTTTACAAGAAAGTTCCTGTACTCGTCCACAATGGAAGACCCATTTGCGAATCCGTTGTAATTATGGAATACATAGATGAAGTTTGGAAGAACAATGGGCCTCCCCTTCTACCTCAAGATCCCTACAGACGATCCCAGATTCGATTCTGGGCTGATTTCGTTCAGAAACAGGTGTTTGAGGGTTTCTTCTTATCAATGACGACTGAATGGGAAGCACAGGAGAAAGCCATTAAGGAAGTGAAAGAGAAGTTGAAAGTTCTTGAAGAACAGGGGTTGAAGAGTTTGCTGGCGGAGGCAGAGGGCAGTCCATTTGTGAACGGCGACGAACTTGGATTCTTGGACATAGTGACGCTGACAGTACTTGGAATGTACGAGATTCACGAAGAGTTTTTTGGAATGAAACTTGTTGAAGAAGAGAAGATCCCAATTATGTACTCGTGGTTGAACAGGTTGAAGGAGCACCCAGTTGCAAAGGAGGCAGGGGCTCCCAAGGAAAAGGTTTTGGCGCTTCTTCAGTTCATCAGGCAAAAGGCTCTACGCTCCACCGCTGCTTAA 708 46.61 MAEQNRVVLHGMWASPFAKRVELALKIKGIPFEYVEEDIQNKSPELAKLNPVYKKVPVLVHNGRPICESVVIMEYIDEVWKNNGPPLLPQDPYRRSQIRFWADFVQKQVFEGFFLSMTTEWEAQEKAIKEVKEKLKVLEEQGLKSLLAEAEGSPFVNGDELGFLDIVTLTVLGMYEIHEEFFGMKLVEEEKIPIMYSWLNRLKEHPVAKEAGAPKEKVLALLQFIRQKALRSTAA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8381645 8382352 + CmaCh13G011300.1 Cma13g01130 306957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01130 235 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Cma13g01130 235 Pfam Glutathione S-transferase, N-terminal domain 9 78 IPR004045 -
Cma13g01130 235 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 221 IPR010987 -
Cma13g01130 235 SUPERFAMILY GST C-terminal domain-like 78 228 IPR036282 -
Cma13g01130 235 Pfam Glutathione S-transferase, C-terminal domain 119 206 IPR004046 -
Cma13g01130 235 Gene3D Glutaredoxin 1 87 - -
Cma13g01130 235 PANTHER GLUTATHIONE S-TRANSFERASE 1 228 - -
Cma13g01130 235 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 228 IPR045073 -
Cma13g01130 235 SFLD Main.3: Omega- and Tau-like 4 232 IPR045073 -
Cma13g01130 235 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Cma13g01130 235 CDD GST_C_Tau 92 225 IPR045074 GO:0004364|GO:0006749
Cma13g01130 235 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cma13g01130 235 CDD GST_N_Tau 7 80 - -
Cma13g01130 235 SFLD Glutathione Transferase (cytosolic) 4 232 IPR040079 -
Cma13g01130 235 Gene3D - 88 233 - -
Cma13g01130 235 Coils Coil 121 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01130 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - cmos:111431396 408.297
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01130 Cma-Chr13:8381645 Cma14g01961 Cma-Chr14:13801828 8.16E-21 dispersed
Cma13g01129 Cma-Chr13:8380382 Cma13g01130 Cma-Chr13:8381645 8.14E-105 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g546 . Blo16g00186 . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00069 Csa01g00542 Chy12g01546 Cme12g01997 . . . . . . . . . . . Cma13g01130 . . . . . Bhi08g01176 . . Lac10g0072 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01130 Cma_Chr13 FPKM 75.234467 90.760658 15.764446 16.222145 33.934814 30.076492 34.045849 11.360719 13.505089 12.860066