Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01131 ATGAATAGCAGAGAAGTTCACTGCCTTGCGTTATTAAGCAAATGCAGATCTCTTAGAACCTTGAAGCAAATCCACGCTTTTACGTTCAAAACAGGCTTAAATTCCGACCCATTAGTCGCCGGCAAGCTTCTTCTTCATTGTGCAGTTACACTTCCTGATTCTGTTCGCTACGCTGGACGCCTCTTCCTTGACATTCGAAATCCAGATGTGTTCATGTACAACACACTCATCCGTGGACTTTCCGATTCTGACACCCCCTCTCATGCCCTTCTACTGTTTGTTGAAATGCGTCGCAAATCCATGGCTTTACCCGATAGTTTCACTTTTGCTTTTGTGCTCAAAGCTGCCGCTAATTGCAGGGCTCTCAGAAATGGGTTGCAATTGCATCGCCAAGCTATTGGTTATGGTCTGGATACCCATCTTTTTGTTGGGACGACACTGATCAGCATGTATGCTGAATGTGCAAGCTTGGCCTTTGCACGGCAGGTGTTTGATGAAATGATTGAACCAAATATTGTTGCTTGGAATGCCATTGTTGCTGCGTGTTTTAGGTGCGAGGACGTTAAGAATGCAGAGCAAGTGTTCCATCGGATGCCCATAAAAAACTTAACCTCGTGGAACATCATGCTTGCAGGGTACACAAAAGCAGGTGAGCTTCGGCTAGCCAGGGAGGTGTTTATGAAAATGCCTTTGAAAGATGAAGTTTCGTGGAGTAGTATGATTGTTGGGTTCGCTCATAATGGCAGCTTTAACAACGCTTTCGCATTTTTCAGGGAGTTGCGGCAGGACGGGATGAGACCAAATGAGGTAAGCCTCACAGGTGCGCTTTCTGCATGTGCACAAGCTGGGGCATTCGAGTTTGGAAGAATCCTACATGGGTTTGTTGAAAAATCTGGCTTTCTGCAGATTGTTTCAGTGAGTAATGCACTGATCGATACTTACTCTAAATGTGGGAATTTGGATATGGCTCGTTTGATCTTTGATAATATGCTGGAAAGGAGTGTTGTCTCTTGGACAGCCATGATTACAGGGCTCGCAATGCATGGCTACGGGGAGGAAGCAATCAGATTATTTAATGAGATGGAAGAGTCTAATATTAAGCCCGACGGTATCACCTTTATATCCATCTTGTATGCTTGTAGCCATGCTGGATTGGTTGATTTGGGATGTTCTTATTTTTCAAGGATGGTAAATATTTACGGTATTGAACCCGTAATTGAACATTATGGTTGCATAGTTGATCTTTATGGTCGAGCTGGTAAGCTGCAGCAAGCTTTTGACTTTGTATCTCAAATGCCAGTTTCACCGAATGATATTGTCTGGAGGACACTTCTTGGAGCTTGTAGCATTCATGGTAACTTAGAACTGGCAGGGCAAGTAAAGAGGCGACTCTTCGAACTCGACCCCGAAAACTCTGGAGATCATGTTCTTTTGTCAAACATTTATGCAGTTGCGGGGAAATGGAAGGATGTTGCCACTTTAAGAAGATCAATGACTCACCAGAAACTTAAGAAAACTCCTGGTTGGAGCATGATTGAAGTCGATAGAATCATGTATAGTTTTGTTGCAGGAGAGAAGCAAAATGACATAGCAGAAGAGGCACATCAAAAACTAAGGGAGATAATGTCGAGGATGAGAATAGAAGGAGTTTATGTTCCAGAAGTTGGAAGTGTATTGCATGATATAGAAGTGGAAGAAAAGGAAGACTCTGTTTCACAGCACAGTGAGAAGCTAGCAGTTGCTTTTGGGATGGTGAGGCTGCCAAGAGGAAGAGGCATAAGAGTGGTGAAGAATTTAAGAATTTGCAGGGACTGTCACACTGTGATGAAGCTGATTTCTAAGGTGTATGAAGTAGAAATTGTGGTGAGAGATAGAAGTCGGTTCCACTCTTTCACACATGGTTCATGTTCGTGCAGAGACTACTGGTAA 1929 43.44 MNSREVHCLALLSKCRSLRTLKQIHAFTFKTGLNSDPLVAGKLLLHCAVTLPDSVRYAGRLFLDIRNPDVFMYNTLIRGLSDSDTPSHALLLFVEMRRKSMALPDSFTFAFVLKAAANCRALRNGLQLHRQAIGYGLDTHLFVGTTLISMYAECASLAFARQVFDEMIEPNIVAWNAIVAACFRCEDVKNAEQVFHRMPIKNLTSWNIMLAGYTKAGELRLAREVFMKMPLKDEVSWSSMIVGFAHNGSFNNAFAFFRELRQDGMRPNEVSLTGALSACAQAGAFEFGRILHGFVEKSGFLQIVSVSNALIDTYSKCGNLDMARLIFDNMLERSVVSWTAMITGLAMHGYGEEAIRLFNEMEESNIKPDGITFISILYACSHAGLVDLGCSYFSRMVNIYGIEPVIEHYGCIVDLYGRAGKLQQAFDFVSQMPVSPNDIVWRTLLGACSIHGNLELAGQVKRRLFELDPENSGDHVLLSNIYAVAGKWKDVATLRRSMTHQKLKKTPGWSMIEVDRIMYSFVAGEKQNDIAEEAHQKLREIMSRMRIEGVYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMVRLPRGRGIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8382898 8384826 + CmaCh13G011310.1 Cma13g01131 306958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01131 642 Pfam PPR repeat 235 264 IPR002885 -
Cma13g01131 642 Pfam PPR repeat 205 230 IPR002885 -
Cma13g01131 642 Pfam PPR repeat 408 433 IPR002885 -
Cma13g01131 642 Gene3D Tetratricopeptide repeat domain 83 201 IPR011990 GO:0005515
Cma13g01131 642 Pfam PPR repeat family 68 117 IPR002885 -
Cma13g01131 642 Pfam PPR repeat family 334 380 IPR002885 -
Cma13g01131 642 Pfam DYW family of nucleic acid deaminases 551 642 IPR032867 GO:0008270
Cma13g01131 642 Coils Coil 528 548 - -
Cma13g01131 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Cma13g01131 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Cma13g01131 642 PANTHER OS01G0913400 PROTEIN-RELATED 11 583 - -
Cma13g01131 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Cma13g01131 642 TIGRFAM PPR: pentatricopeptide repeat domain 308 336 IPR002885 -
Cma13g01131 642 TIGRFAM PPR: pentatricopeptide repeat domain 72 102 IPR002885 -
Cma13g01131 642 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Cma13g01131 642 TIGRFAM PPR: pentatricopeptide repeat domain 205 229 IPR002885 -
Cma13g01131 642 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Cma13g01131 642 Gene3D Tetratricopeptide repeat domain 290 386 IPR011990 GO:0005515
Cma13g01131 642 Gene3D Tetratricopeptide repeat domain 202 289 IPR011990 GO:0005515
Cma13g01131 642 Gene3D Tetratricopeptide repeat domain 389 583 IPR011990 GO:0005515
Cma13g01131 642 PANTHER - 11 583 - -
Cma13g01131 642 Pfam Pentatricopeptide repeat domain 167 198 IPR002885 -
Cma13g01131 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Cma13g01131 642 Pfam E motif 451 513 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01131 - - - cmos:111431396 1269.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01131 Cma18g00129 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01131 Cma-Chr13:8382898 Cma17g00868 Cma-Chr17:6671198 1.29E-173 dispersed
Cma14g00017 Cma-Chr14:73985 Cma13g01131 Cma-Chr13:8382898 2.18E-119 dispersed
Cma13g01131 Cma-Chr13:8382898 Cma10g00565 Cma-Chr10:2591943 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g498 Blo04g00757 . . . . . . . Cmo13g01186 Cmo18g00099 . . . . . Cpe20g00204 . . . . . . . . . . . . . . . . Cone16ag0146 . . Lsi02g00317 Csa01g00794 Chy12g01322 Cme12g01747 . . . . . . Bma03g00812 . Sed08g2571 . . Cma13g01131 Cma18g00129 Car13g00964 Car18g00120 Cpe09g01064 . Bhi08g01419 Tan05g2078 Cmetu12g1270 Lac10g0376 Hepe07g2280 . . Cla01g01421 Cam01g1488 Cec01g1527 Cco01g1574 Clacu01g1512 Cmu01g1404 . . . . .
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010028 0 6 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01131 Cma_Chr13 FPKM 0.221358 0.61243 0.616894 0.898728 1.940654 2.019855 2.342738 1.102799 0.689818 0.689498